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ONTOLOGY REPORT - ANNOTATIONS


Term:shikimic acid
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Accession:CHEBI:16119 term browser browse the term
Definition:A cyclohexenecarboxylic acid that is cyclohex-1-ene-1-carboxylic acid substituted by hydroxy groups at positions 3, 4 and 5 (the 3R,4S,5R stereoisomer). It is an intermediate metabolite in plants and microorganisms.
Synonyms:exact_synonym: (3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid
 related_synonym: 3,4,5-Trihydroxy-1-cyclohexenecarboxylic acid;   3alpha,4alpha,5beta-trihydroxy-1-cyclohexene-1-carboxylic acid;   Formula=C7H10O5;   InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,4-6,8-10H,2H2,(H,11,12)/t4-,5-,6-/m1/s1;   InChIKey=JXOHGGNKMLTUBP-HSUXUTPPSA-N;   L-shikimic acid;   SMILES=O[C@@H]1CC(=C[C@@H](O)[C@H]1O)C(O)=O;   Shikimate;   [3R-(3alpha,4alpha,5beta)]-3,4,5-trihydroxy-1-cyclohexene-1-carboxylic acid
 alt_id: CHEBI:26662;   CHEBI:26664;   CHEBI:45740;   CHEBI:9133
 xref: Beilstein:2210055 "Beilstein";   CAS:138-59-0 "ChemIDplus";   CAS:138-59-0 "KEGG COMPOUND";   CAS:138-59-0 "NIST Chemistry WebBook";   HMDB:HMDB0003070;   KEGG:C00493;   KNApSAcK:C00001203
 xref_mesh: MESH:D012765
 xref: PDBeChem:SKM;   PMID:24190737 "Europe PMC";   PMID:24628944 "Europe PMC";   PMID:24783849 "Europe PMC";   PMID:24836188 "Europe PMC";   PMID:24894540 "Europe PMC";   PMID:24981409 "Europe PMC";   Reaxys:2210055 "Reaxys";   Wikipedia:Shikimic_acid
 cyclic_relationship: is_conjugate_acid_of CHEBI:36208


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shikimic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:6480464
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:6480464
G Fgf7 fibroblast growth factor 7 JBrowse link 3 118,315,859 118,368,464 RGD:6480464
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:6480464
G Mir300 microRNA 300 JBrowse link 6 133,874,152 133,874,230 RGD:6480464
G Nfkbia NFKB inhibitor alpha JBrowse link 6 76,267,227 76,270,457 RGD:6480464
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19716
    role 19663
      biological role 19661
        biochemical role 19179
          metabolite 19151
            eukaryotic metabolite 18770
              plant metabolite 17103
                shikimic acid 9
                  (3R,4S,5R)-4,5-Dihydroxy-3-phosphonooxy-cyclohex-1-enecarboxylic acid anion 0
                  3-dehydroshikimic acid 0
                  3-phosphoshikimic acid 0
                  4-coumaroylshikimic acid 0
                  5-O-(1-carboxyvinyl)-3-phosphoshikimic acid 0
                  5-[(E)-caffeoyl]shikimic acid 0
                  5-amino-5-deoxy-3-dehydroshikimic acid 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19716
    subatomic particle 19712
      composite particle 19712
        hadron 19712
          baryon 19712
            nucleon 19712
              atomic nucleus 19712
                atom 19712
                  main group element atom 19598
                    p-block element atom 19598
                      carbon group element atom 19486
                        carbon atom 19480
                          organic molecular entity 19480
                            organic group 18407
                              organic divalent group 18397
                                organodiyl group 18397
                                  carbonyl group 18285
                                    carbonyl compound 18285
                                      carboxylic acid 17940
                                        monocarboxylic acid 17260
                                          cyclohexenecarboxylic acid 15
                                            shikimic acid 9
                                              (3R,4S,5R)-4,5-Dihydroxy-3-phosphonooxy-cyclohex-1-enecarboxylic acid anion 0
                                              3-dehydroshikimic acid 0
                                              3-phosphoshikimic acid 0
                                              4-coumaroylshikimic acid 0
                                              5-O-(1-carboxyvinyl)-3-phosphoshikimic acid 0
                                              5-[(E)-caffeoyl]shikimic acid 0
                                              5-amino-5-deoxy-3-dehydroshikimic acid 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.