Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:shikimic acid
go back to main search page
Accession:CHEBI:16119 term browser browse the term
Definition:A cyclohexenecarboxylic acid that is cyclohex-1-ene-1-carboxylic acid substituted by hydroxy groups at positions 3, 4 and 5 (the 3R,4S,5R stereoisomer). It is an intermediate metabolite in plants and microorganisms.
Synonyms:exact_synonym: (3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid
 related_synonym: 3,4,5-Trihydroxy-1-cyclohexenecarboxylic acid;   3alpha,4alpha,5beta-trihydroxy-1-cyclohexene-1-carboxylic acid;   Formula=C7H10O5;   InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,4-6,8-10H,2H2,(H,11,12)/t4-,5-,6-/m1/s1;   InChIKey=JXOHGGNKMLTUBP-HSUXUTPPSA-N;   L-shikimic acid;   SMILES=O[C@@H]1CC(=C[C@@H](O)[C@H]1O)C(O)=O;   Shikimate;   [3R-(3alpha,4alpha,5beta)]-3,4,5-trihydroxy-1-cyclohexene-1-carboxylic acid
 alt_id: CHEBI:26662;   CHEBI:26664;   CHEBI:45740;   CHEBI:9133
 xref: Beilstein:2210055 "Beilstein";   CAS:138-59-0 "ChemIDplus";   CAS:138-59-0 "KEGG COMPOUND";   CAS:138-59-0 "NIST Chemistry WebBook";   HMDB:HMDB0003070;   KEGG:C00493;   KNApSAcK:C00001203
 xref_mesh: MESH:D012765
 xref: PDBeChem:SKM;   PMID:24190737 "Europe PMC";   PMID:24628944 "Europe PMC";   PMID:24783849 "Europe PMC";   PMID:24836188 "Europe PMC";   PMID:24894540 "Europe PMC";   PMID:24981409 "Europe PMC";   Reaxys:2210055 "Reaxys";   Wikipedia:Shikimic_acid
 cyclic_relationship: is_conjugate_acid_of CHEBI:36208


show annotations for term's descendants       view all columns           Sort by:
 
shikimic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:6480464
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:6480464
G Fgf7 fibroblast growth factor 7 JBrowse link 3 118,315,859 118,368,464 RGD:6480464
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:6480464
G Mir300 microRNA 300 JBrowse link 6 133,874,152 133,874,230 RGD:6480464
G Nfkbia NFKB inhibitor alpha JBrowse link 6 76,267,227 76,270,457 RGD:6480464
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19734
    role 19680
      biological role 19678
        biochemical role 19177
          metabolite 19147
            eukaryotic metabolite 18768
              plant metabolite 17113
                shikimic acid 9
                  (3R,4S,5R)-4,5-Dihydroxy-3-phosphonooxy-cyclohex-1-enecarboxylic acid anion 0
                  3-dehydroshikimic acid 0
                  3-phosphoshikimic acid 0
                  4-coumaroylshikimic acid 0
                  5-O-(1-carboxyvinyl)-3-phosphoshikimic acid 0
                  5-[(E)-caffeoyl]shikimic acid 0
                  5-amino-5-deoxy-3-dehydroshikimic acid 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19734
    subatomic particle 19730
      composite particle 19730
        hadron 19730
          baryon 19730
            nucleon 19730
              atomic nucleus 19730
                atom 19730
                  main group element atom 19614
                    p-block element atom 19614
                      carbon group element atom 19506
                        carbon atom 19500
                          organic molecular entity 19500
                            organic group 18414
                              organic divalent group 18406
                                organodiyl group 18406
                                  carbonyl group 18295
                                    carbonyl compound 18295
                                      carboxylic acid 17963
                                        monocarboxylic acid 17265
                                          cyclohexenecarboxylic acid 15
                                            shikimic acid 9
                                              (3R,4S,5R)-4,5-Dihydroxy-3-phosphonooxy-cyclohex-1-enecarboxylic acid anion 0
                                              3-dehydroshikimic acid 0
                                              3-phosphoshikimic acid 0
                                              4-coumaroylshikimic acid 0
                                              5-O-(1-carboxyvinyl)-3-phosphoshikimic acid 0
                                              5-[(E)-caffeoyl]shikimic acid 0
                                              5-amino-5-deoxy-3-dehydroshikimic acid 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.