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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-3-acetic acid
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Accession:CHEBI:16411 term browser browse the term
Definition:A monocarboxylic acid that is acetic acid in which one of the methyl hydrogens has been replaced by a 1H-indol-3-yl group.
Synonyms:related_synonym: (Indol-3-yl)acetate;   (indol-3-yl)acetic acid;   1H-Indol-3-ylacetic acid;   2-(indol-3-yl)ethanoic acid;   3-Indolylessigsaeure;   Formula=C10H9NO2;   IAA;   IES;   InChI=1S/C10H9NO2/c12-10(13)5-7-6-11-9-4-2-1-3-8(7)9/h1-4,6,11H,5H2,(H,12,13);   InChIKey=SEOVTRFCIGRIMH-UHFFFAOYSA-N;   Indoleacetic acid;   SMILES=OC(=O)Cc1c[nH]c2ccccc12;   heteroauxin
 alt_id: CHEBI:24802;   CHEBI:5905
 xref: BPDB:1106;   Beilstein:143358 "Beilstein";   CAS:87-51-4 "ChemIDplus";   CAS:87-51-4 "KEGG COMPOUND";   CAS:87-51-4 "NIST Chemistry WebBook";   DrugBank:DB07950;   Gmelin:143197 "Gmelin";   HMDB:HMDB0000197;   KEGG:C00954;   KNApSAcK:C00000100
 xref_mesh: MESH:C030737
 xref: PDBeChem:IAC;   PMID:13610897 "Europe PMC";   PMID:23545355 "Europe PMC";   PMID:24285754 "Europe PMC";   Reaxys:143358 "Reaxys";   Wikipedia:Indole-3-acetic_acid
 cyclic_relationship: is_conjugate_acid_of CHEBI:30854


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indole-3-acetic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc4 ATP binding cassette subfamily C member 4 JBrowse link 15 103,695,415 103,927,980 RGD:6480464
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:6480464
G Arnt aryl hydrocarbon receptor nuclear translocator JBrowse link 2 196,594,178 196,651,486 RGD:6480464
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 JBrowse link 6 2,308,179 2,316,739 RGD:6480464
G F3 coagulation factor III, tissue factor JBrowse link 2 225,310,686 225,322,281 RGD:6480464
G Gpx1 glutathione peroxidase 1 JBrowse link 8 117,117,430 117,118,528 RGD:6480464
G Gsr glutathione-disulfide reductase JBrowse link 16 62,197,617 62,239,987 RGD:6480464
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6480464
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:6480464
G Il2ra interleukin 2 receptor subunit alpha JBrowse link 17 70,500,672 70,547,929 RGD:6480464
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Slc10a1 solute carrier family 10 member 1 JBrowse link 6 104,617,730 104,631,355 RGD:6480464
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19662
    role 19606
      biological role 19604
        molecular messenger 17946
          hormone 17752
            plant hormone 4896
              indole-3-acetic acid 17
                2-phenylethyl 1H-indol-3-ylacetate 0
                N-(indol-3-ylacetyl)glutamine 0
                N-(indole-3-acetyl)-L-aspartic acid 0
                N-(indole-3-acetyl)glutamic acid 0
                N-(indole-3-acetyl)leucine + 0
                N-(indole-3-acetyl)phenylalanine 0
                N-(indole-3-acetyl)valine 0
                N-[(6-hydroxyindol-3-yl)acetyl]phenylalanine 0
                indol-3-ylacetyl-CoA 0
                indoleacetic acid conjugate + 0
                methyl (indol-3-yl)acetate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19662
    subatomic particle 19658
      composite particle 19658
        hadron 19658
          baryon 19658
            nucleon 19658
              atomic nucleus 19658
                atom 19658
                  main group element atom 19539
                    p-block element atom 19539
                      carbon group element atom 19422
                        carbon atom 19414
                          organic molecular entity 19414
                            organic molecule 19337
                              organic cyclic compound 19089
                                organic heterocyclic compound 18164
                                  organic heteropolycyclic compound 17427
                                    organic heterobicyclic compound 15905
                                      benzopyrrole 5756
                                        indoles 5531
                                          indolyl carboxylic acid 3172
                                            indol-3-yl carboxylic acid 3171
                                              indole-3-acetic acids 3170
                                                indole-3-acetic acid 17
                                                  2-phenylethyl 1H-indol-3-ylacetate 0
                                                  N-(indol-3-ylacetyl)glutamine 0
                                                  N-(indole-3-acetyl)-L-aspartic acid 0
                                                  N-(indole-3-acetyl)glutamic acid 0
                                                  N-(indole-3-acetyl)leucine + 0
                                                  N-(indole-3-acetyl)phenylalanine 0
                                                  N-(indole-3-acetyl)valine 0
                                                  N-[(6-hydroxyindol-3-yl)acetyl]phenylalanine 0
                                                  indol-3-ylacetyl-CoA 0
                                                  indoleacetic acid conjugate + 0
                                                  methyl (indol-3-yl)acetate 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.