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ONTOLOGY REPORT - ANNOTATIONS


Term:uridine
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Accession:CHEBI:16704 term browser browse the term
Definition:A ribonucleoside composed of a molecule of uracil attached to a ribofuranose moiety via a beta-N(1)-glycosidic bond.
Synonyms:related_synonym: 1-beta-D-ribofuranosylpyrimidine-2,4(1H,3H)-dione;   1-beta-D-ribofuranosyluracil;   Formula=C9H12N2O6;   InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1;   InChIKey=DRTQHJPVMGBUCF-XVFCMESISA-N;   SMILES=OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1ccc(=O)[nH]c1=O;   Urd;   Uridin;   beta-Uridine;   u
 alt_id: CHEBI:15296;   CHEBI:27227;   CHEBI:46386;   CHEBI:46391;   CHEBI:46460;   CHEBI:9893
 xref: Beilstein:754904 "Beilstein";   CAS:58-96-8 "ChemIDplus";   CAS:58-96-8 "KEGG COMPOUND";   DrugBank:DB02745;   ECMDB:ECMDB00296;   Gmelin:397474 "Gmelin";   HMDB:HMDB0000296;   KEGG:C00299;   KNApSAcK:C00019674
 xref_mesh: MESH:D014529
 xref: MetaCyc:URIDINE;   PDBeChem:URI;   PMID:12084455 "Europe PMC";   PMID:15621516 "Europe PMC";   PMID:16839635 "Europe PMC";   PMID:17190852 "Europe PMC";   PMID:22392515 "Europe PMC";   PMID:22770225 "Europe PMC";   Reaxys:754904 "Reaxys";   Wikipedia:Uridine;   YMDB:YMDB00127


show annotations for term's descendants       view all columns           Sort by:
 
uridine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adora1 adenosine A1 receptor JBrowse link 13 51,042,111 51,076,913 RGD:6480464
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:6480464
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:6480464
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:6480464
G Mt-co1 mitochondrially encoded cytochrome c oxidase I JBrowse link MT 5,323 6,867 RGD:6480464
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:6480464
G Slc28a1 solute carrier family 28 member 1 JBrowse link 1 142,948,942 142,992,410 RGD:6480464
G Slc28a2 solute carrier family 28 member 2 JBrowse link 3 114,355,003 114,647,382 RGD:6480464
G Slc29a1 solute carrier family 29 member 1 JBrowse link 9 17,784,468 17,799,008 RGD:6480464
G Slc29a2 solute carrier family 29 member 2 JBrowse link 1 220,306,622 220,314,631 RGD:6480464
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:6480464
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19654
    role 19598
      application 19220
        pro-agent 8766
          prodrug 8563
            uracil 5622
              uridine 15
                3'-(enolpyruvyl)uridine 5'-monophosphate 0
                5'-O-(dihydroxyphosphanyl)-2'-O-\{2-[2-(dimethylamino)ethoxy]ethyl\}-5-methyluridine 0
                5-aminomethyl-2-thiouridine + 0
                nikkomycin Z 0
                uridine residue 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19654
    subatomic particle 19650
      composite particle 19650
        hadron 19650
          baryon 19650
            nucleon 19650
              atomic nucleus 19650
                atom 19650
                  main group element atom 19531
                    p-block element atom 19531
                      carbon group element atom 19413
                        carbon atom 19405
                          organic molecular entity 19405
                            heteroorganic entity 18990
                              organochalcogen compound 18705
                                organooxygen compound 18615
                                  carbohydrates and carbohydrate derivatives 11721
                                    carbohydrate 11721
                                      carbohydrate derivative 11336
                                        glycosyl compound 10287
                                          N-glycosyl compound 4203
                                            nucleoside 4027
                                              ribonucleoside 684
                                                pyrimidine ribonucleosides 141
                                                  uridines 43
                                                    uridine 15
                                                      3'-(enolpyruvyl)uridine 5'-monophosphate 0
                                                      5'-O-(dihydroxyphosphanyl)-2'-O-\{2-[2-(dimethylamino)ethoxy]ethyl\}-5-methyluridine 0
                                                      5-aminomethyl-2-thiouridine + 0
                                                      nikkomycin Z 0
                                                      uridine residue 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.