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ONTOLOGY REPORT - ANNOTATIONS


Term:agmatine
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Accession:CHEBI:17431 term browser browse the term
Definition:A guanidine that has formula C5H14N4.
Synonyms:related_synonym: (4-aminobutyl)guanidine;   1-(4-aminobutyl)guanidine;   Formula=C5H14N4;   InChI=1S/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9);   InChIKey=QYPPJABKJHAVHS-UHFFFAOYSA-N;   N-(4-aminobutyl)guanidine;   SMILES=NCCCCNC(N)=N
 alt_id: CHEBI:13747;   CHEBI:18576;   CHEBI:2514;   CHEBI:40556
 xref: CAS:306-60-5 "KEGG COMPOUND";   KEGG:C00179;   KNApSAcK:C00001400
 xref_mesh: MESH:D000376
 cyclic_relationship: is_conjugate_base_of CHEBI:58145


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agmatine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fosb FosB proto-oncogene, AP-1 transcription factor subunit JBrowse link 1 80,214,691 80,221,417 RGD:6480464
G Gfap glial fibrillary acidic protein JBrowse link 10 90,990,762 90,999,435 RGD:6480464
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 JBrowse link 3 2,507,745 2,534,664 RGD:6480464
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:6480464
G Mbp myelin basic protein JBrowse link 18 79,326,738 79,437,310 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Slc47a1 solute carrier family 47 member 1 JBrowse link 10 47,631,425 47,685,379 RGD:6480464
G Slc47a2 solute carrier family 47 member 2 JBrowse link 10 47,587,909 47,631,373 RGD:6480464
G Tfrc transferrin receptor JBrowse link 11 71,397,423 71,419,263 RGD:6480464
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19662
    role 19606
      application 19232
        refrigerant 16992
          ammonia 16562
            organic amino compound 16561
              primary amino compound 6641
                agmatine 12
                  N(1)-aminoaminopropylagmatine 0
                  N(4)-phosphoagmatine 0
                  acetylagmatine 0
                  agmatidine 0
                  alpha-allenylagmatine 0
                  feruloylagmatine + 0
                  p-coumaroylagmatine + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19662
    subatomic particle 19658
      composite particle 19658
        hadron 19658
          baryon 19658
            nucleon 19658
              atomic nucleus 19658
                atom 19658
                  main group element atom 19539
                    main group molecular entity 19539
                      s-block molecular entity 19322
                        hydrogen molecular entity 19312
                          hydrides 18241
                            inorganic hydride 17110
                              pnictogen hydride 17068
                                nitrogen hydride 16889
                                  azane 16565
                                    ammonia 16562
                                      organic amino compound 16561
                                        primary amino compound 6641
                                          agmatine 12
                                            N(1)-aminoaminopropylagmatine 0
                                            N(4)-phosphoagmatine 0
                                            acetylagmatine 0
                                            agmatidine 0
                                            alpha-allenylagmatine 0
                                            feruloylagmatine + 0
                                            p-coumaroylagmatine + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.