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ONTOLOGY REPORT - ANNOTATIONS


Term:hydrogencarbonate
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Accession:CHEBI:17544 term browser browse the term
Definition:The carbon oxoanion resulting from the removal of a proton from carbonic acid.
Synonyms:exact_synonym: hydrogen(trioxidocarbonate)(1-);   hydrogencarbonate(1-);   hydrogentrioxocarbonate(1-);   hydrogentrioxocarbonate(IV);   hydroxidodioxidocarbonate(1-)
 related_synonym: Acid carbonate;   BICARBONATE ION;   Formula=CHO3;   HCO3-;   InChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)/p-1;   InChIKey=BVKZGUZCCUSVTD-UHFFFAOYSA-M;   SMILES=OC([O-])=O;   [CO2(OH)](-);   bicarbonate;   hydrogen carbonate
 alt_id: CHEBI:13363;   CHEBI:22863;   CHEBI:40961;   CHEBI:5589;   MESH:D001639
 xref: Beilstein:3903504 "Beilstein";   CAS:71-52-3 "ChemIDplus";   Gmelin:49249 "Gmelin";   HMDB:HMDB0000595;   KEGG:C00288
 xref_mesh: MESH:D001639
 xref: MetaCyc:HCO3;   PDBeChem:BCT;   PMID:17215880 "Europe PMC";   PMID:17505962 "Europe PMC";   PMID:18439416 "Europe PMC";   PMID:28732801 "Europe PMC";   PMID:29150416 "Europe PMC";   PMID:29460248 "Europe PMC";   PMID:29466234 "Europe PMC";   PMID:4208463 "Europe PMC";   Wikipedia:Bicarbonate
 cyclic_relationship: is_conjugate_acid_of CHEBI:41609;   is_conjugate_base_of CHEBI:28976


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hydrogencarbonate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADCY10 adenylate cyclase 10 JBrowse link 1 167,809,080 167,916,389 RGD:6480464
G ALB albumin JBrowse link 4 73,404,287 73,421,482 RGD:6480464
G CA1 carbonic anhydrase 1 JBrowse link 8 85,327,608 85,378,113 RGD:6480464
G CA2 carbonic anhydrase 2 JBrowse link 8 85,463,902 85,481,493 RGD:6480464
G CA3 carbonic anhydrase 3 JBrowse link 8 85,438,859 85,449,040 RGD:6480464
G CFTR CF transmembrane conductance regulator JBrowse link 7 117,480,025 117,668,665 RGD:6480464
G EDN3 endothelin 3 JBrowse link 20 59,300,415 59,325,992 RGD:6480464
G ESR1 estrogen receptor 1 JBrowse link 6 151,654,148 152,129,619 RGD:6480464
G ESR2 estrogen receptor 2 JBrowse link 14 64,226,707 64,338,631 RGD:6480464
G SLC26A3 solute carrier family 26 member 3 JBrowse link 7 107,765,469 107,803,223 RGD:6480464
G SLC39A8 solute carrier family 39 member 8 JBrowse link 4 102,251,041 102,345,482 RGD:6480464
G SLC4A2 solute carrier family 4 member 2 JBrowse link 7 151,058,200 151,076,527 RGD:6480464
G SLC9A2 solute carrier family 9 member A2 JBrowse link 2 102,619,553 102,711,355 RGD:6480464
G SLC9A3 solute carrier family 9 member A3 JBrowse link 5 470,456 524,449 RGD:6480464
G SOD1 superoxide dismutase 1 JBrowse link 21 31,659,693 31,668,931 RGD:6480464
sodium hydrogencarbonate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCC2 ATP binding cassette subfamily C member 2 JBrowse link 10 99,782,602 99,853,741 RGD:6480464
G ABCG2 ATP binding cassette subfamily G member 2 (Junior blood group) JBrowse link 4 88,090,264 88,231,626 RGD:6480464
G FN1 fibronectin 1 JBrowse link 2 215,360,440 215,436,167 RGD:6480464
G NEFH neurofilament heavy JBrowse link 22 29,480,218 29,491,390 RGD:6480464
G SLC15A1 solute carrier family 15 member 1 JBrowse link 13 98,683,801 98,752,672 RGD:6480464
G SLC22A6 solute carrier family 22 member 6 JBrowse link 11 62,976,597 62,984,967 RGD:6480464
G SLC39A8 solute carrier family 39 member 8 JBrowse link 4 102,251,041 102,345,482 RGD:6480464
G SLC4A4 solute carrier family 4 member 4 JBrowse link 4 71,062,646 71,572,087 RGD:6480464
G TGFB1 transforming growth factor beta 1 JBrowse link 19 41,330,323 41,353,922 RGD:6480464
G VIM vimentin JBrowse link 10 17,228,241 17,237,593 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 23758
    role 23647
      biological role 23610
        biochemical role 22959
          cofactor 16482
            hydrogencarbonate 24
              potassium hydrogencarbonate 0
              sodium hydrogencarbonate 10
Path 2
Term Annotations click to browse term
  CHEBI ontology 23758
    subatomic particle 23707
      composite particle 23707
        hadron 23707
          baryon 23707
            nucleon 23707
              atomic nucleus 23707
                atom 23707
                  main group element atom 23527
                    p-block element atom 23527
                      carbon group element atom 23238
                        carbon atom 23215
                          organic molecular entity 23215
                            heteroorganic entity 22857
                              organochalcogen compound 22341
                                organooxygen compound 22264
                                  carbon oxoanion 40
                                    hydrogencarbonate 24
                                      potassium hydrogencarbonate 0
                                      sodium hydrogencarbonate 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.