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ONTOLOGY REPORT - ANNOTATIONS


Term:cytidine
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Accession:CHEBI:17562 term browser browse the term
Definition:A pyrimidine nucleoside in which cytosine is attached to ribofuranose via a beta-N(1)-glycosidic bond.
Synonyms:related_synonym: 1-beta-D-Ribofuranosylcytosine;   1beta-D-ribofuranosylcytosine;   4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE;   4-amino-1-beta-D-ribofuranosylpyrimidin-2(1H)-one;   4-amino-1beta-D-ribofuranosyl-2(1H)-pyrimidinone;   Cyd;   Cytidin;   Cytosine riboside;   Formula=C9H13N3O5;   InChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1;   InChIKey=UHDGCWIWMRVCDJ-XVFCMESISA-N;   SMILES=Nc1ccn([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)n1;   Zytidin;   cytosine-1beta-D-Ribofuranoside
 alt_id: CHEBI:14063;   CHEBI:23515;   CHEBI:4053;   CHEBI:41649;   CHEBI:41686;   CHEBI:41704
 xref: Beilstein:89173 "Beilstein";   CAS:65-46-3 "ChemIDplus";   CAS:65-46-3 "KEGG COMPOUND";   CAS:65-46-3 "NIST Chemistry WebBook";   DrugBank:DB02097;   Gmelin:84763 "Gmelin";   HMDB:HMDB0000089;   KEGG:C00475;   KEGG:D07769
 xref_mesh: MESH:D003562
 xref: MetaCyc:CYTIDINE;   PDBeChem:CTN;   PMID:12591866 "Europe PMC";   PMID:15621516 "Europe PMC";   PMID:19194376 "Europe PMC";   Reaxys:89173 "Reaxys";   Wikipedia:Cytidine


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cytidine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adora1 adenosine A1 receptor JBrowse link 13 51,042,111 51,076,913 RGD:6480464
G Adora2a adenosine A2a receptor JBrowse link 20 14,265,251 14,282,873 RGD:6480464
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:6480464
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:6480464
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:6480464
G Slc28a1 solute carrier family 28 member 1 JBrowse link 1 142,948,942 142,992,410 RGD:6480464
G Slc29a1 solute carrier family 29 member 1 JBrowse link 9 17,784,468 17,799,008 RGD:6480464
G Slc29a2 solute carrier family 29 member 2 JBrowse link 1 220,306,622 220,314,631 RGD:6480464
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19662
    role 19606
      biological role 19604
        biochemical role 19133
          metabolite 19101
            eukaryotic metabolite 18744
              fungal metabolite 17361
                Saccharomyces cerevisiae metabolite 16384
                  cytidine 9
                    cytidine residue 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19662
    subatomic particle 19658
      composite particle 19658
        hadron 19658
          baryon 19658
            nucleon 19658
              atomic nucleus 19658
                atom 19658
                  main group element atom 19539
                    p-block element atom 19539
                      carbon group element atom 19422
                        carbon atom 19414
                          organic molecular entity 19414
                            heteroorganic entity 18998
                              organochalcogen compound 18715
                                organooxygen compound 18625
                                  carbohydrates and carbohydrate derivatives 11731
                                    carbohydrate 11731
                                      carbohydrate derivative 11345
                                        glycosyl compound 10297
                                          N-glycosyl compound 4207
                                            nucleoside 4030
                                              ribonucleoside 685
                                                pyrimidine ribonucleosides 142
                                                  cytidines 66
                                                    cytidine 9
                                                      cytidine residue 0
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