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ONTOLOGY REPORT - ANNOTATIONS


Term:thymidine
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Accession:CHEBI:17748 term browser browse the term
Definition:A pyrimidine 2'-deoxyribonucleoside having thymine as the nucleobase.
Synonyms:related_synonym: 1-(2-deoxy-beta-D-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione;   2'-deoxy-5-methyluridine;   2'-deoxythymidine;   2'-thymidine;   5-methyl-2'-deoxyuridine;   Deoxythymidine;   Formula=C10H14N2O5;   InChI=1S/C10H14N2O5/c1-5-3-12(10(16)11-9(5)15)8-2-6(14)7(4-13)17-8/h3,6-8,13-14H,2,4H2,1H3,(H,11,15,16)/t6-,7+,8+/m0/s1;   InChIKey=IQFYYKKMVGJFEH-XLPZGREQSA-N;   SMILES=Cc1cn([C@H]2C[C@H](O)[C@@H](CO)O2)c(=O)[nH]c1=O;   T;   dThd;   thymine 2'-deoxyriboside
 alt_id: CHEBI:15244;   CHEBI:19273;   CHEBI:45782;   CHEBI:45834;   CHEBI:45917;   CHEBI:9579
 xref: Beilstein:89285 "Beilstein";   CAS:50-89-5 "ChemIDplus";   CAS:50-89-5 "KEGG COMPOUND";   DrugBank:DB04485;   Gmelin:282610 "Gmelin";   HMDB:HMDB0000273;   KEGG:C00214;   KNApSAcK:C00019698
 xref_mesh: MESH:D013936
 xref: MetaCyc:THYMIDINE;   PDBeChem:THM;   PMID:22770225 "Europe PMC";   PMID:2559771 "Europe PMC";   Reaxys:89285 "Reaxys";   Wikipedia:Thymidine
 cyclic_relationship: is_enantiomer_of CHEBI:63624


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thymidine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acta2 actin alpha 2, smooth muscle JBrowse link 1 252,537,614 252,550,394 RGD:6480464
G Alpi alkaline phosphatase, intestinal JBrowse link 9 94,197,616 94,201,910 RGD:6480464
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464
G Csf1 colony stimulating factor 1 JBrowse link 2 210,522,370 210,550,546 RGD:6480464
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:6480464
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:6480464
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:6480464
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:6480464
G Mmp1 matrix metallopeptidase 1 JBrowse link 8 5,703,206 5,723,593 RGD:6480464
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:6480464
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:6480464
G Slc28a1 solute carrier family 28 member 1 JBrowse link 1 142,948,942 142,992,410 RGD:6480464
G Slc29a1 solute carrier family 29 member 1 JBrowse link 9 17,784,468 17,799,008 RGD:6480464
G Slc29a2 solute carrier family 29 member 2 JBrowse link 1 220,306,622 220,314,631 RGD:6480464
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:6480464
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:6480464
dTDP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gale UDP-galactose-4-epimerase JBrowse link 5 154,310,453 154,314,959 RGD:6480464
G Uxs1 UDP-glucuronate decarboxylase 1 JBrowse link 9 11,165,006 11,240,329 RGD:6480464
dTMP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:6480464
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    role 19613
      biological role 19611
        biochemical role 19138
          metabolite 19106
            thymidine 23
              5'-O-\{[3-(benzoyloxy)-3-oxopropyl]carbamoyl\}thymidine 0
              5,6-dihydrothymidine 0
              alpha-tritiated thymidine 0
              polyoxin + 0
              thymidine phosphate + 4
              tritiated thymidine + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    p-block element atom 19545
                      carbon group element atom 19428
                        carbon atom 19420
                          organic molecular entity 19420
                            heteroorganic entity 19003
                              organochalcogen compound 18718
                                organooxygen compound 18629
                                  carbohydrates and carbohydrate derivatives 11703
                                    carbohydrate 11703
                                      carbohydrate derivative 11314
                                        glycosyl compound 10294
                                          N-glycosyl compound 4200
                                            nucleoside 4023
                                              deoxyribonucleoside 982
                                                2'-deoxyribonucleoside 310
                                                  pyrimidine 2'-deoxyribonucleoside 295
                                                    thymidine 23
                                                      5'-O-\{[3-(benzoyloxy)-3-oxopropyl]carbamoyl\}thymidine 0
                                                      5,6-dihydrothymidine 0
                                                      alpha-tritiated thymidine 0
                                                      polyoxin + 0
                                                      thymidine phosphate + 4
                                                      tritiated thymidine + 0
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