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ONTOLOGY REPORT - ANNOTATIONS


Term:5-methylcytosine
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Accession:CHEBI:27551 term browser browse the term
Definition:A pyrimidine that is a derivative of cytosine, having a methyl group at the 5-position.
Synonyms:exact_synonym: 4-amino-5-methylpyrimidin-2(1H)-one
 related_synonym: 4-Amino-5-methyl-2-pyrimidinol;   4-amino-5-methyl-2(1H)-pyrimidinone;   Formula=C5H7N3O;   InChI=1S/C5H7N3O/c1-3-2-7-5(9)8-4(3)6/h2H,1H3,(H3,6,7,8,9);   InChIKey=LRSASMSXMSNRBT-UHFFFAOYSA-N;   SMILES=Cc1c[nH]c(=O)nc1N
 alt_id: CHEBI:20608;   CHEBI:2094;   CHEBI:85013
 xref: Beilstein:120387 "Beilstein";   CAS:554-01-8 "ChemIDplus";   CAS:554-01-8 "KEGG COMPOUND";   CAS:554-01-8 "NIST Chemistry WebBook";   KEGG:C02376
 xref_mesh: MESH:D044503
 xref: MetaCyc:CPD0-2018;   PMID:17325422 "Europe PMC";   PMID:22770225 "Europe PMC";   PMID:25304211 "Europe PMC";   PMID:25421665 "Europe PMC";   PMID:25510268 "Europe PMC";   PMID:25510270 "Europe PMC";   PMID:25522353 "Europe PMC";   PMID:25620416 "Europe PMC";   PMID:25675106 "Europe PMC";   Reaxys:508871 "Reaxys";   Wikipedia:5-Methylcytosine


show annotations for term's descendants       view all columns           Sort by:
 
5-methylcytosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:6480464
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:6480464
G Wrap53 WD repeat containing, antisense to TP53 JBrowse link 10 56,169,024 56,185,800 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19716
    role 19663
      application 19308
        refrigerant 17091
          ammonia 16690
            organic amino compound 16689
              aromatic amine 13593
                aminopyrimidine 1048
                  methylcytosine 3
                    5-methylcytosine 3
                      5-methylcytosin-1-yl group 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19716
    subatomic particle 19712
      composite particle 19712
        hadron 19712
          baryon 19712
            nucleon 19712
              atomic nucleus 19712
                atom 19712
                  main group element atom 19598
                    main group molecular entity 19598
                      s-block molecular entity 19361
                        hydrogen molecular entity 19350
                          hydrides 18280
                            inorganic hydride 17204
                              pnictogen hydride 17166
                                nitrogen hydride 17003
                                  azane 16693
                                    ammonia 16690
                                      organic amino compound 16689
                                        aromatic amine 13593
                                          aminopyrimidine 1048
                                            cytosine 929
                                              methylcytosine 3
                                                5-methylcytosine 3
                                                  5-methylcytosin-1-yl group 0
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