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ONTOLOGY REPORT - ANNOTATIONS


Term:5-methylcytosine
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Accession:CHEBI:27551 term browser browse the term
Definition:A pyrimidine that is a derivative of cytosine, having a methyl group at the 5-position.
Synonyms:exact_synonym: 4-amino-5-methylpyrimidin-2(1H)-one
 related_synonym: 4-Amino-5-methyl-2-pyrimidinol;   4-amino-5-methyl-2(1H)-pyrimidinone;   Formula=C5H7N3O;   InChI=1S/C5H7N3O/c1-3-2-7-5(9)8-4(3)6/h2H,1H3,(H3,6,7,8,9);   InChIKey=LRSASMSXMSNRBT-UHFFFAOYSA-N;   SMILES=Cc1c[nH]c(=O)nc1N
 alt_id: CHEBI:20608;   CHEBI:2094;   CHEBI:85013
 xref: Beilstein:120387 "Beilstein";   CAS:554-01-8 "ChemIDplus";   CAS:554-01-8 "KEGG COMPOUND";   CAS:554-01-8 "NIST Chemistry WebBook";   KEGG:C02376
 xref_mesh: MESH:D044503
 xref: MetaCyc:CPD0-2018;   PMID:17325422 "Europe PMC";   PMID:22770225 "Europe PMC";   PMID:25304211 "Europe PMC";   PMID:25421665 "Europe PMC";   PMID:25510268 "Europe PMC";   PMID:25510270 "Europe PMC";   PMID:25522353 "Europe PMC";   PMID:25620416 "Europe PMC";   PMID:25675106 "Europe PMC";   Reaxys:508871 "Reaxys";   Wikipedia:5-Methylcytosine


show annotations for term's descendants       view all columns           Sort by:
 
5-methylcytosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:6480464
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:6480464
G Wrap53 WD repeat containing, antisense to TP53 JBrowse link 10 56,169,024 56,185,800 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19734
    role 19680
      application 19336
        refrigerant 17097
          ammonia 16696
            organic amino compound 16695
              aromatic amine 13604
                aminopyrimidine 1051
                  methylcytosine 3
                    5-methylcytosine 3
                      5-methylcytosin-1-yl group 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19734
    subatomic particle 19730
      composite particle 19730
        hadron 19730
          baryon 19730
            nucleon 19730
              atomic nucleus 19730
                atom 19730
                  main group element atom 19614
                    main group molecular entity 19614
                      s-block molecular entity 19378
                        hydrogen molecular entity 19367
                          hydrides 18289
                            inorganic hydride 17210
                              pnictogen hydride 17172
                                nitrogen hydride 17008
                                  azane 16699
                                    ammonia 16696
                                      organic amino compound 16695
                                        aromatic amine 13604
                                          aminopyrimidine 1051
                                            cytosine 929
                                              methylcytosine 3
                                                5-methylcytosine 3
                                                  5-methylcytosin-1-yl group 0
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