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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:amylose
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Accession:CHEBI:28102 term browser browse the term
Definition:A glucan composed of unbranched chains of D-glucopyranose residues in alpha(1->4) glycosidic linkage. The number of repeated glucose subunits (n) is usually in the range of 300 to 3000, but can be many thousands. One of the two components of starch (the other, 70-80%, being amylopectin). Cf. linear maltodextrin, in which the chain length is typically between 3 and 17 glucose units.
Synonyms:exact_synonym: (1->4)-alpha-D-glucopyranan
 related_synonym: (1,4-alpha-D-Glucosyl)n;   (1,4-alpha-D-Glucosyl)n+1;   1,4-alpha-D-Glucan;   4-{(1,4)-alpha-D-Glucosyl}(n-1)-D-glucose;   Amylose chain;   Formula=(C6H10O5)nH2O
 alt_id: CHEBI:22539;   CHEBI:2694
 xref: CAS:9005-82-7;   HMDB:HMDB0003403;   KEGG:C00718;   KEGG:D02329;   KEGG:G10495;   PMID:24162153;   PMID:24299760;   PMID:24491702;   PMID:24505384;   Reaxys:8194785;   Wikipedia:Amylose


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starch term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn1 actinin, alpha 1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of ACTN1 mRNA] CTD PMID:27363782 NCBI chr 6:103,376,557...103,470,497
Ensembl chr 6:103,375,799...103,470,555
JBrowse link
G Adcy6 adenylate cyclase 6 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of ADCY6 mRNA] CTD PMID:27363782 NCBI chr 7:140,270,678...140,291,722
Ensembl chr 7:140,270,692...140,291,620
JBrowse link
G Alox15 arachidonate 15-lipoxygenase multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in increased expression of ALOX15 mRNA] CTD PMID:27363782 NCBI chr10:56,953,692...56,962,145
Ensembl chr10:56,953,691...56,962,161
JBrowse link
G Ap1b1 adaptor related protein complex 1 subunit beta 1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of AP1B1 mRNA] CTD PMID:27363782 NCBI chr14:85,230,652...85,281,806
Ensembl chr14:85,230,648...85,281,803
JBrowse link
G Ccnd1 cyclin D1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of CCND1 mRNA] CTD PMID:27363782 NCBI chr 1:218,090,750...218,100,447
Ensembl chr 1:218,090,750...218,100,325
JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A multiple interactions ISO [Starch co-treated with Oleic Acid] results in increased expression of CPT1A mRNA; [Starch co-treated with Palmitates] results in increased expression of CPT1A mRNA CTD PMID:26895660 NCBI chr 1:218,568,157...218,629,679
Ensembl chr 1:218,569,510...218,629,678
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of CREB3L2 mRNA] CTD PMID:27363782 NCBI chr 4:64,869,285...64,981,519
Ensembl chr 4:64,869,026...64,981,384
JBrowse link
G Csf1r colony stimulating factor 1 receptor multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of CSF1R mRNA] CTD PMID:27363782 NCBI chr18:56,414,493...56,458,300
Ensembl chr18:56,414,488...56,458,300
JBrowse link
G Ehd3 EH-domain containing 3 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of EHD3 mRNA] CTD PMID:27363782 NCBI chr 6:25,076,012...25,102,457
Ensembl chr 6:25,074,955...25,100,977
JBrowse link
G Ezr ezrin multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of EZR mRNA] CTD PMID:27363782 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412
JBrowse link
G Gadd45b growth arrest and DNA-damage-inducible, beta multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of GADD45B mRNA] CTD PMID:27363782 NCBI chr 7:11,646,283...11,648,338
Ensembl chr 7:11,646,269...11,648,322
JBrowse link
G Igfbp1 insulin-like growth factor binding protein 1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of IGFBP1 mRNA] CTD PMID:27363782 NCBI chr14:87,448,716...87,453,783
Ensembl chr14:87,448,692...87,453,785
JBrowse link
G Insig1 insulin induced gene 1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of INSIG1 mRNA] CTD PMID:27363782 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515
JBrowse link
G Itga4 integrin subunit alpha 4 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of ITGA4 mRNA] CTD PMID:27363782 NCBI chr 3:66,178,745...66,265,547
Ensembl chr 3:66,193,059...66,263,960
JBrowse link
G Lifr LIF receptor subunit alpha multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of LIFR mRNA] CTD PMID:27363782 NCBI chr 2:56,424,910...56,489,346
Ensembl chr 2:56,426,367...56,489,415
JBrowse link
G Map4k1 mitogen activated protein kinase kinase kinase kinase 1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of MAP4K1 mRNA] CTD PMID:27363782 NCBI chr 1:87,937,126...87,959,514
Ensembl chr 1:87,938,042...87,959,569
JBrowse link
G Mgam maltase-glucoamylase increases metabolic processing ISO MGAM protein results in increased metabolism of Starch CTD PMID:17585022 NCBI chr 4:69,018,592...69,114,027
Ensembl chr 4:68,849,033...68,996,961
JBrowse link
G Plcg2 phospholipase C, gamma 2 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in decreased expression of PLCG2 mRNA] CTD PMID:27363782 NCBI chr19:50,039,410...50,173,543
Ensembl chr19:50,045,020...50,173,220
JBrowse link
G RT1-CE16 RT1 class I, locus CE16 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in increased expression of RT1-CE16 mRNA] CTD PMID:27363782
G Scd stearoyl-CoA desaturase multiple interactions ISO [Starch co-treated with Oleic Acid] results in increased expression of SCD1 mRNA; [Starch co-treated with Palmitates] results in increased expression of SCD1 mRNA CTD PMID:26895660 NCBI chr 1:264,159,966...264,173,061
Ensembl chr 1:264,160,129...264,172,729
JBrowse link
G Sgk1 serum/glucocorticoid regulated kinase 1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in increased expression of SGK1 mRNA] CTD PMID:27363782 NCBI chr 1:24,185,451...24,302,309
Ensembl chr 1:24,185,435...24,302,298
JBrowse link
G Socs2 suppressor of cytokine signaling 2 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in increased expression of SOCS2 mRNA] CTD PMID:27363782 NCBI chr 7:36,495,496...36,500,878
Ensembl chr 7:36,495,480...36,499,784
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 multiple interactions EXP Starch analog inhibits the reaction [Rapeseed Oil metabolite results in increased expression of SREBF1 mRNA] CTD PMID:27363782 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19816
    role 19764
      biological role 19764
        biochemical role 19313
          metabolite 19294
            eukaryotic metabolite 18943
              plant metabolite 17424
                amylose 23
                  starch 23
Path 2
Term Annotations click to browse term
  CHEBI ontology 19816
    subatomic particle 19814
      composite particle 19814
        hadron 19814
          baryon 19814
            nucleon 19814
              atomic nucleus 19814
                atom 19814
                  main group element atom 19702
                    p-block element atom 19702
                      carbon group element atom 19608
                        carbon atom 19597
                          organic molecular entity 19597
                            heteroorganic entity 19184
                              organochalcogen compound 18894
                                organooxygen compound 18816
                                  carbohydrates and carbohydrate derivatives 12191
                                    carbohydrate 12191
                                      polysaccharide 3041
                                        homopolysaccharide 1370
                                          glucan 1352
                                            amylose 23
                                              starch 23
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.