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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:gentamycin C
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Accession:CHEBI:28417 term browser browse the term
Synonyms:related_synonym: Formula=C19H37N5O7R2;   Gentamicin C
 alt_id: CHEBI:14294;   CHEBI:24208;   CHEBI:5308
 xref: CAS:11097-82-8;   KEGG:C01918
 xref_mesh: MESH:C100093
 cyclic_relationship: is_conjugate_base_of CHEBI:75616


show annotations for term's descendants           Sort by:
 
gentamycin C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E decreases uptake
multiple interactions
EXP APOE protein results in decreased uptake of gentamicin C
APOE protein inhibits the reaction [gentamicin C results in decreased expression of and results in decreased activity of SLC5A1 protein]; APOE protein inhibits the reaction [gentamicin C results in decreased expression of SLC5A1 mRNA]
CTD PMID:15777622 NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,259...51,377,794
JBrowse link
G SLC5A1 solute carrier family 5 member 1 decreases expression
multiple interactions
EXP gentamicin C results in decreased expression of SLC5A1 mRNA; gentamicin C results in decreased expression of SLC5A1 protein
[gentamicin C results in decreased expression of and results in decreased activity of SLC5A1 protein] which results in decreased uptake of Aminoglycosides; APOE protein inhibits the reaction [gentamicin C results in decreased expression of and results in decreased activity of SLC5A1 protein]; APOE protein inhibits the reaction [gentamicin C results in decreased expression of SLC5A1 mRNA]; gentamicin C results in decreased expression of and results in decreased activity of SLC5A1 protein
CTD PMID:12927799, PMID:15777622 NCBI chr14:48,566,400...48,704,145
Ensembl chr14:48,566,343...48,705,841
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 858
    role 836
      biological role 836
        antimicrobial agent 215
          carbohydrate-containing antibiotic 3
            aminoglycoside antibiotic 3
              gentamycin 3
                gentamycin C 2
                  gentamycin C1 0
                  gentamycin C1a 0
                  gentamycin C2 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 858
    subatomic particle 843
      composite particle 843
        hadron 843
          baryon 843
            nucleon 843
              atomic nucleus 843
                atom 843
                  main group element atom 831
                    p-block element atom 828
                      carbon group element atom 801
                        carbon atom 800
                          organic molecular entity 800
                            heteroorganic entity 556
                              organochalcogen compound 509
                                organooxygen compound 444
                                  carbohydrates and carbohydrate derivatives 108
                                    carbohydrate 108
                                      carbohydrate derivative 97
                                        glycosyl compound 40
                                          glycoside 15
                                            aminoglycoside 9
                                              aminoglycoside antibiotic 3
                                                gentamycin 3
                                                  gentamycin C 2
                                                    gentamycin C1 0
                                                    gentamycin C1a 0
                                                    gentamycin C2 0
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