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ONTOLOGY REPORT - ANNOTATIONS


Term:heparan sulfate
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Accession:CHEBI:28815 term browser browse the term
Definition:A linear polysaccharide in which the backbone consists of a variably sulfated repeating disaccharide unit.
Synonyms:related_synonym: Formula=(C12H19NO20S3)n;   Heparan N-sulfate;   Heparan sulphate;   Heparatan sulfate;   Heparin monosulfate;   Heparin sulfate;   Heparitin monosulfate;   Heparitin sulfate;   N-Acetylheparan sulfate
 alt_id: CHEBI:24502;   CHEBI:24507;   CHEBI:5661
 xref: Beilstein:8186767 "Beilstein";   CAS:9050-30-0 "ChemIDplus";   CAS:9050-30-0 "KEGG COMPOUND";   KEGG:C00925;   KEGG:D08536
 xref_mesh: MESH:D006497
 xref: PMID:8713797 "Europe PMC"


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heparan sulfate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:6480464
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:6480464
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:6480464
G Cxcl3 chemokine (C-X-C motif) ligand 3 JBrowse link 14 18,820,168 18,839,659 RGD:6480464
G Fgf1 fibroblast growth factor 1 JBrowse link 18 32,273,830 32,359,831 RGD:6480464
G Fgf10 fibroblast growth factor 10 JBrowse link 2 51,673,480 51,747,533 RGD:6480464
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:6480464
G Fgf4 fibroblast growth factor 4 JBrowse link 1 218,024,537 218,029,539 RGD:6480464
G Fgf7 fibroblast growth factor 7 JBrowse link 3 118,315,859 118,368,464 RGD:6480464
G Fgf8 fibroblast growth factor 8 JBrowse link 1 265,492,949 265,498,965 RGD:6480464
G Fgfr1 Fibroblast growth factor receptor 1 JBrowse link 16 71,265,390 71,319,046 RGD:6480464
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 1 200,590,951 200,696,946 RGD:6480464
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:6480464
G Fgfr4 fibroblast growth factor receptor 4 JBrowse link 17 9,990,072 10,004,339 RGD:6480464
G Gns glucosamine (N-acetyl)-6-sulfatase JBrowse link 7 63,467,027 63,501,054 RGD:6480464
G Gpc1 glypican 1 JBrowse link 9 99,998,275 100,026,818 RGD:6480464
G Hpse heparanase JBrowse link 14 10,534,358 10,576,686 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Ndst1 N-deacetylase and N-sulfotransferase 1 JBrowse link 18 55,951,497 56,014,107 RGD:6480464
G Ndst2 N-deacetylase and N-sulfotransferase 2 JBrowse link 15 3,995,797 4,006,491 RGD:6480464
G Prnp prion protein JBrowse link 3 124,515,917 124,531,320 RGD:6480464
G Timp3 TIMP metallopeptidase inhibitor 3 JBrowse link 7 23,543,125 23,594,170 RGD:6480464
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19662
    role 19606
      biological role 19604
        biochemical role 19133
          metabolite 19101
            eukaryotic metabolite 18744
              animal metabolite 18484
                mammalian metabolite 18465
                  mouse metabolite 17887
                    heparan sulfate 24
Path 2
Term Annotations click to browse term
  CHEBI ontology 19662
    subatomic particle 19658
      composite particle 19658
        hadron 19658
          baryon 19658
            nucleon 19658
              atomic nucleus 19658
                atom 19658
                  main group element atom 19539
                    p-block element atom 19539
                      carbon group element atom 19422
                        carbon atom 19414
                          organic molecular entity 19414
                            heteroorganic entity 18998
                              organochalcogen compound 18715
                                organooxygen compound 18625
                                  carbohydrates and carbohydrate derivatives 11731
                                    carbohydrate 11731
                                      polysaccharide 2921
                                        polysaccharide derivative 2901
                                          aminoglycan 388
                                            glycosaminoglycan 362
                                              heparan 24
                                                heparan sulfates 24
                                                  heparan sulfate 24
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.