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ONTOLOGY REPORT - ANNOTATIONS


Term:all-trans-neoxanthin
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Accession:CHEBI:32446 term browser browse the term
Definition:A neoxanthin in which all of the double bonds have trans geometry.
Synonyms:exact_synonym: (3S,3'S,5R,5'R,6R,6'S,8R)-6,7-didehydro-5,5',6,6'-tetrahydro-5',6'-epoxy-beta,beta-carotene-3,3',5-triol;   (3S,5R,6R,3'S,5'R,6'S)-6,7-didehydro-5',6'-epoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,5,3'-triol
 related_synonym: Formula=C40H56O4;   InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-22-35-36(5,6)25-33(41)27-38(35,9)43)15-11-12-16-30(2)18-14-20-32(4)23-24-40-37(7,8)26-34(42)28-39(40,10)44-40/h11-21,23-24,33-34,41-43H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23+,29-15+,30-16+,31-19+,32-20+/t22-,33-,34-,38+,39+,40-/m0/s1;   InChIKey=PGYAYSRVSAJXTE-MTYISEJWSA-N;   Neoxanthin;   SMILES=[H]C(=C=C1C(C)(C)C[C@H](O)C[C@@]1(C)O)C(\\C)=C\\C=C\\C(C)=C\\C=C\\C=C(C)\\C=C\\C=C(C)\\C=C\\[C@@]12O[C@]1(C)C[C@@H](O)CC2(C)C
 alt_id: CHEBI:22344;   CHEBI:44249;   CHEBI:7517
 xref: Beilstein:101197 "Beilstein";   CAS:14660-91-4 "ChemIDplus";   CAS:14660-91-4 "KEGG COMPOUND";   COMe:MOL000106;   HMDB:HMDB0003020;   KEGG:C08606;   KEGG:C13431;   KNApSAcK:C00003780
 xref_mesh: MESH:C011947
 xref: MetaCyc:CPD1F-135;   PMID:11029576 "Europe PMC";   PMID:13706623 "Europe PMC";   PMID:15333710 "Europe PMC";   PMID:22502907 "Europe PMC";   PMID:8610051 "Europe PMC";   Reaxys:101197 "Reaxys"


show annotations for term's descendants       view all columns           Sort by:
 
all-trans-neoxanthin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aifm1 apoptosis inducing factor, mitochondria associated 1 JBrowse link X 135,304,063 135,343,062 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19749
    role 19696
      biological role 19694
        biophysical role 12248
          biological pigment 1035
            all-trans-neoxanthin 4
Path 2
Term Annotations click to browse term
  CHEBI ontology 19749
    subatomic particle 19745
      composite particle 19745
        hadron 19745
          baryon 19745
            nucleon 19745
              atomic nucleus 19745
                atom 19745
                  main group element atom 19630
                    main group molecular entity 19630
                      s-block molecular entity 19390
                        hydrogen molecular entity 19379
                          hydrides 18296
                            organic hydride 17573
                              organic fundamental parent 17573
                                hydrocarbon 16996
                                  terpene 9332
                                    tetraterpene 404
                                      carotene 404
                                        carotenoid 404
                                          xanthophyll 148
                                            epoxycarotenoid 28
                                              epoxycarotenol 28
                                                neoxanthin 4
                                                  all-trans-neoxanthin 4
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.