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ONTOLOGY REPORT - ANNOTATIONS


Term:fluorescein isothiocyanate
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Accession:CHEBI:37926 term browser browse the term
Definition:An oxaspiro compound that is an isothiocyanato derivative of fluorescein. It exists as two isomers, with the isothiocyanato group located at either the 5- or 6-position.
Synonyms:exact_synonym: 3',6'-dihydroxy-4-isothiocyanato-3H-spiro[2-benzofuran-1,9'-xanthen]-3-one
 related_synonym: 3',6'-Dihydroxy-5(or 6)-isothiocyanatospiro(isobenzofuran-1(3H),9'-(9H)xanthene)-3-one;   FITC;   Fluoreszeinisothiocyanat
 xref: Beilstein:1407295 "Beilstein";   CAS:27072-45-3 "ChemIDplus";   PMID:10771133 "Europe PMC";   PMID:11033063 "Europe PMC";   PMID:15459331 "Europe PMC";   PMID:15532565 "Europe PMC";   PMID:17222473 "Europe PMC";   PMID:17826731 "Europe PMC";   PMID:18230185 "Europe PMC";   PMID:18281972 "Europe PMC";   PMID:23319388 "Europe PMC";   PMID:23477460 "Europe PMC";   PMID:23596091 "Europe PMC";   PMID:7430623 "Europe PMC";   PMID:7674093 "Europe PMC";   PMID:7680023 "Europe PMC";   PMID:7764542 "Europe PMC";   PMID:8735869 "Europe PMC";   PMID:9540973 "Europe PMC"


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fluorescein 5-isothiocyanate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb7 ATP binding cassette subfamily B member 7 JBrowse link X 75,150,511 75,291,950 RGD:6480464
G Akr1c2 aldo-keto reductase family 1, member C2 JBrowse link 17 69,388,337 69,435,160 RGD:6480464
G Anxa4 annexin A4 JBrowse link 4 118,538,775 118,595,591 RGD:6480464
G Arhgap6 Rho GTPase activating protein 6 JBrowse link X 26,314,561 26,845,242 RGD:6480464
G Azi2 5-azacytidine induced 2 JBrowse link 8 126,411,030 126,435,581 RGD:6480464
G Capzb capping actin protein of muscle Z-line subunit beta JBrowse link 5 157,642,742 157,742,487 RGD:6480464
G Cd109 CD109 molecule JBrowse link 8 85,951,420 86,065,411 RGD:6480464
G Cd180 CD180 molecule JBrowse link 2 32,820,275 32,833,223 RGD:6480464
G Cd86 CD86 molecule JBrowse link 11 67,060,305 67,117,990 RGD:6480464
G Cd93 CD93 molecule JBrowse link 3 142,778,798 142,783,774 RGD:6480464
G Cdc20 cell division cycle 20 JBrowse link 5 137,260,728 137,264,931 RGD:6480464
G Copa COPI coat complex subunit alpha JBrowse link 13 90,467,285 90,508,894 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Dcaf4 DDB1 and CUL4 associated factor 4 JBrowse link 6 107,001,763 107,027,466 RGD:6480464
G Dot1l DOT1 like histone lysine methyltransferase JBrowse link 7 11,786,105 11,824,742 RGD:6480464
G Elac1 elaC ribonuclease Z 1 JBrowse link 18 69,706,522 69,723,869 RGD:6480464
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 JBrowse link 10 108,095,131 108,099,483 RGD:6480464
G Flrt3 fibronectin leucine rich transmembrane protein 3 JBrowse link 3 134,684,446 134,696,586 RGD:6480464
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Hspa5 heat shock protein family A (Hsp70) member 5 JBrowse link 3 13,838,304 13,842,763 RGD:6480464
G Hspa9 heat shock protein family A (Hsp70) member 9 JBrowse link 18 27,731,072 27,749,235 RGD:6480464
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6480464
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta JBrowse link 16 74,177,233 74,230,809 RGD:6480464
G Ikzf4 IKAROS family zinc finger 4 JBrowse link 7 3,061,422 3,098,142 RGD:6480464
G Il17re interleukin 17 receptor E JBrowse link 4 145,413,157 145,426,608 RGD:6480464
G Il31ra interleukin 31 receptor A JBrowse link 2 44,333,347 44,408,005 RGD:6480464
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:6480464
G Lypd3 Ly6/Plaur domain containing 3 JBrowse link 1 81,499,856 81,504,306 RGD:6480464
G Maff MAF bZIP transcription factor F JBrowse link 7 120,580,743 120,592,095 RGD:6480464
G Map3k20 mitogen-activated protein kinase kinase kinase 20 JBrowse link 3 58,965,025 59,120,507 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:6480464
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:6480464
G Mt2A metallothionein 2A JBrowse link 19 11,307,966 11,308,740 RGD:6480464
G Mybpc1 myosin binding protein C1 JBrowse link 7 29,086,159 29,171,909 RGD:6480464
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:6480464
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:6480464
G Plce1 phospholipase C, epsilon 1 JBrowse link 1 257,156,023 257,465,440 RGD:6480464
G Postn periostin JBrowse link 2 143,656,820 143,688,087 RGD:6480464
G Pprc1 PPARG related coactivator 1 JBrowse link 1 265,809,892 265,826,319 RGD:6480464
G Psd4 pleckstrin and Sec7 domain containing 4 JBrowse link 3 1,478,432 1,515,094 RGD:6480464
G Psmd14 proteasome 26S subunit, non-ATPase 14 JBrowse link 3 47,578,449 47,673,330 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link 8 128,169,191 128,266,681 RGD:6480464
G Skor1 SKI family transcriptional corepressor 1 JBrowse link 8 68,029,930 68,040,504 RGD:6480464
G Slc38a10 solute carrier family 38, member 10 JBrowse link 10 109,284,054 109,333,907 RGD:6480464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6480464
G Stat5a signal transducer and activator of transcription 5A JBrowse link 10 88,764,732 88,789,060 RGD:6480464
G Stat6 signal transducer and activator of transcription 6 JBrowse link 7 70,946,228 70,963,542 RGD:6480464
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 JBrowse link 5 3,783,247 3,836,485 RGD:6480464
G Tslp thymic stromal lymphopoietin JBrowse link 18 25,613,601 25,618,066 RGD:6480464
G Txn1 thioredoxin 1 JBrowse link 5 75,049,735 75,057,731 RGD:6480464
G Usp3 ubiquitin specific peptidase 3 JBrowse link 8 72,207,970 72,284,871 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19654
    role 19598
      biological role 19596
        antigen 109
          fluorescein isothiocyanate 55
            fluorescein 5-isothiocyanate 55
            fluorescein 6-isothiocyanate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19654
    subatomic particle 19650
      composite particle 19650
        hadron 19650
          baryon 19650
            nucleon 19650
              atomic nucleus 19650
                atom 19650
                  main group element atom 19531
                    p-block element atom 19531
                      carbon group element atom 19413
                        carbon atom 19405
                          organic molecular entity 19405
                            organic group 18331
                              organic divalent group 18321
                                organodiyl group 18321
                                  carbonyl group 18209
                                    carbonyl compound 18209
                                      carboxylic ester 13946
                                        lactone 5857
                                          gamma-lactone 1194
                                            fluorescein 66
                                              fluorescein isothiocyanate 55
                                                fluorescein 5-isothiocyanate 55
                                                fluorescein 6-isothiocyanate 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.