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ONTOLOGY REPORT - ANNOTATIONS


Term:all-trans-4-oxoretinol
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Accession:CHEBI:44597 term browser browse the term
Definition:A retinoid that is all-trans-retinol in which the hydrogens at position 4 have been replaced by an oxo group.
Synonyms:related_synonym: 4-ketoretinol;   4-oxo-ROL;   4-oxoretinol;   Formula=C20H28O2;   InChI=1S/C20H28O2/c1-15(7-6-8-16(2)12-14-21)9-10-18-17(3)19(22)11-13-20(18,4)5/h6-10,12,21H,11,13-14H2,1-5H3/b8-6+,10-9+,15-7+,16-12+;   InChIKey=PLIUCYCUYQIBDZ-RMWYGNQTSA-N;   SMILES=C1(=C(C(CCC1(C)C)=O)C)/C=C/C(=C/C=C/C(=C/CO)/C)/C
 xref: CAS:62702-55-0 "ChemIDplus";   CAS:62702-55-0 "KEGG COMPOUND";   DrugBank:DB02699;   HMDB:HMDB0012329;   KEGG:C16683
 xref_mesh: MESH:C041819
 xref: PDBeChem:OXR;   PMID:10415093 "Europe PMC";   PMID:10557354 "Europe PMC";   PMID:15817863 "Europe PMC";   PMID:17943179 "Europe PMC";   PMID:18006143 "Europe PMC";   PMID:19492420 "Europe PMC";   PMID:24662164 "Europe PMC";   PMID:8643497 "Europe PMC";   PMID:9377581 "Europe PMC";   PMID:9581846 "Europe PMC";   Patent:US6150421;   Reaxys:14831438 "Reaxys"


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all-trans-4-oxoretinol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:6480464
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:6480464
G Col4a2 collagen type IV alpha 2 chain JBrowse link 16 83,386,388 83,522,169 RGD:6480464
G Crabp2 cellular retinoic acid binding protein 2 JBrowse link 2 187,322,416 187,326,794 RGD:6480464
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 1 256,382,861 256,386,729 RGD:6480464
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:6480464
G Foxa1 forkhead box A1 JBrowse link 6 78,516,579 78,549,669 RGD:6480464
G Gata6 GATA binding protein 6 JBrowse link 18 2,415,821 2,447,087 RGD:6480464
G Ivl involucrin JBrowse link 2 192,761,171 192,773,346 RGD:6480464
G Krt18 keratin 18 JBrowse link 7 143,629,455 143,633,131 RGD:6480464
G Krt19 keratin 19 JBrowse link 10 88,055,843 88,060,560 RGD:6480464
G Krt7 keratin 7 JBrowse link 7 143,059,731 143,075,907 RGD:6480464
G Krt8 keratin 8 JBrowse link 7 143,596,511 143,603,745 RGD:6480464
G Mcl1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 2 197,786,212 197,788,992 RGD:6480464
G Meis1 Meis homeobox 1 JBrowse link 14 103,182,178 103,321,809 RGD:6480464
G Meis2 Meis homeobox 2 JBrowse link 3 107,560,172 107,762,732 RGD:6480464
G Meox1 mesenchyme homeobox 1 JBrowse link 10 89,797,011 89,817,009 RGD:6480464
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:6480464
G Olr1 oxidized low density lipoprotein receptor 1 JBrowse link 4 163,239,853 163,261,937 RGD:6480464
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:6480464
G Rarres1 retinoic acid receptor responder 1 JBrowse link 2 164,650,722 164,684,982 RGD:6480464
G Tgm2 transglutaminase 2 JBrowse link 3 154,597,165 154,627,257 RGD:6480464

Term paths to the root
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Term Annotations click to browse term
  CHEBI ontology 19741
    role 19688
      application 19339
        pharmaceutical 19214
          drug 19214
            antineoplastic agent 16873
              all-trans-4-oxoretinol 22
Path 2
Term Annotations click to browse term
  CHEBI ontology 19741
    subatomic particle 19737
      composite particle 19737
        hadron 19737
          baryon 19737
            nucleon 19737
              atomic nucleus 19737
                atom 19737
                  main group element atom 19622
                    main group molecular entity 19622
                      s-block molecular entity 19388
                        hydrogen molecular entity 19377
                          hydrides 18283
                            organic hydride 17547
                              organic fundamental parent 17547
                                hydrocarbon 16958
                                  terpene 9321
                                    diterpene 8254
                                      diterpenoid 8254
                                        retinoid 7813
                                          retinol 279
                                            all-trans-retinol 279
                                              all-trans-4-oxoretinol 22
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.