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ONTOLOGY REPORT - ANNOTATIONS


Term:all-trans-4-oxoretinol
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Accession:CHEBI:44597 term browser browse the term
Definition:A retinoid that is all-trans-retinol in which the hydrogens at position 4 have been replaced by an oxo group.
Synonyms:related_synonym: 4-ketoretinol;   4-oxo-ROL;   4-oxoretinol;   Formula=C20H28O2;   InChI=1S/C20H28O2/c1-15(7-6-8-16(2)12-14-21)9-10-18-17(3)19(22)11-13-20(18,4)5/h6-10,12,21H,11,13-14H2,1-5H3/b8-6+,10-9+,15-7+,16-12+;   InChIKey=PLIUCYCUYQIBDZ-RMWYGNQTSA-N;   SMILES=C1(=C(C(CCC1(C)C)=O)C)/C=C/C(=C/C=C/C(=C/CO)/C)/C
 xref: CAS:62702-55-0 "ChemIDplus";   CAS:62702-55-0 "KEGG COMPOUND";   DrugBank:DB02699;   HMDB:HMDB0012329;   KEGG:C16683
 xref_mesh: MESH:C041819
 xref: PDBeChem:OXR;   PMID:10415093 "Europe PMC";   PMID:10557354 "Europe PMC";   PMID:15817863 "Europe PMC";   PMID:17943179 "Europe PMC";   PMID:18006143 "Europe PMC";   PMID:19492420 "Europe PMC";   PMID:24662164 "Europe PMC";   PMID:8643497 "Europe PMC";   PMID:9377581 "Europe PMC";   PMID:9581846 "Europe PMC";   Patent:US6150421;   Reaxys:14831438 "Reaxys"


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all-trans-4-oxoretinol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh1 cadherin 1 JBrowse link 8 106,603,350 106,670,247 RGD:6480464
G Col1a1 collagen, type I, alpha 1 JBrowse link 11 94,936,224 94,953,042 RGD:6480464
G Col4a2 collagen, type IV, alpha 2 JBrowse link 8 11,312,805 11,449,287 RGD:6480464
G Crabp2 cellular retinoic acid binding protein II JBrowse link 3 87,948,693 87,953,372 RGD:6480464
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:6480464
G Fas Fas (TNF receptor superfamily member 6) JBrowse link 19 34,290,647 34,327,775 RGD:6480464
G Foxa1 forkhead box A1 JBrowse link 12 57,540,628 57,548,029 RGD:6480464
G Gata6 GATA binding protein 6 JBrowse link 18 11,052,510 11,085,636 RGD:6480464
G Ivl involucrin JBrowse link 3 92,570,899 92,573,790 RGD:6480464
G Krt18 keratin 18 JBrowse link 15 102,028,216 102,032,026 RGD:6480464
G Krt19 keratin 19 JBrowse link 11 100,140,810 100,145,926 RGD:6480464
G Krt7 keratin 7 JBrowse link 15 101,412,403 101,427,806 RGD:6480464
G Krt8 keratin 8 JBrowse link 15 101,996,711 102,004,342 RGD:6480464
G Mcl1 myeloid cell leukemia sequence 1 JBrowse link 3 95,656,944 95,663,179 RGD:6480464
G Meis1 Meis homeobox 1 JBrowse link 11 18,880,428 19,019,651 RGD:6480464
G Meis2 Meis homeobox 2 JBrowse link 2 115,861,264 116,067,537 RGD:6480464
G Meox1 mesenchyme homeobox 1 JBrowse link 11 101,877,510 101,894,354 RGD:6480464
G Muc5ac mucin 5, subtypes A and C, tracheobronchial/gastric JBrowse link 7 141,788,958 141,819,227 RGD:6480464
G Olr1 oxidized low density lipoprotein (lectin-like) receptor 1 JBrowse link 6 129,479,150 129,507,350 RGD:6480464
G Rara retinoic acid receptor, alpha JBrowse link 11 98,927,800 98,974,942 RGD:6480464
G Rarres1 retinoic acid receptor responder (tazarotene induced) 1 JBrowse link 3 67,478,886 67,515,523 RGD:6480464
G Tgm2 transglutaminase 2, C polypeptide JBrowse link 2 158,116,405 158,146,392 RGD:6480464

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  CHEBI ontology 20971
    role 20952
      application 20373
        pharmaceutical 19971
          drug 19971
            antineoplastic agent 17297
              all-trans-4-oxoretinol 22
Path 2
Term Annotations click to browse term
  CHEBI ontology 20971
    subatomic particle 20965
      composite particle 20965
        hadron 20965
          baryon 20965
            nucleon 20965
              atomic nucleus 20965
                atom 20965
                  main group element atom 20803
                    main group molecular entity 20803
                      s-block molecular entity 20290
                        hydrogen molecular entity 20198
                          hydrides 19006
                            organic hydride 18226
                              organic fundamental parent 18226
                                hydrocarbon 17727
                                  terpene 9532
                                    diterpene 8452
                                      diterpenoid 8452
                                        retinoid 7999
                                          retinol 283
                                            all-trans-retinol 283
                                              all-trans-4-oxoretinol 22
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.