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ONTOLOGY REPORT - ANNOTATIONS


Term:5-bromo-2'-deoxyuridine
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Accession:CHEBI:472552 term browser browse the term
Definition:A pyrimidine 2'-deoxyribonucleoside compound having 5-bromouracil as the nucleobase.
Synonyms:related_synonym: 5-Bdu;   5-Bromodeoxyuridine;   5-Bromodesoxyuridine;   5-Bromouracil deoxyriboside;   5-Bromouracil-2-deoxyriboside;   BrdU;   Bromodeoxyuridine;   Bromouracil deoxyriboside;   Formula=C9H11BrN2O5;   InChI=1S/C9H11BrN2O5/c10-4-2-12(9(16)11-8(4)15)7-1-5(14)6(3-13)17-7/h2,5-7,13-14H,1,3H2,(H,11,15,16)/t5-,6+,7+/m0/s1;   InChIKey=WOVKYSAHUYNSMH-RRKCRQDMSA-N;   SMILES=OC[C@H]1O[C@H](C[C@@H]1O)n1cc(Br)c(=O)[nH]c1=O;   broxuridina;   broxuridine;   broxuridinum
 alt_id: CHEBI:31310;   CHEBI:47713
 xref: Beilstein:4236087 "Beilstein";   CAS:59-14-3 "ChemIDplus";   Drug_Central:3042 "DrugCentral"
 xref_mesh: MESH:D001973
 xref: PDBeChem:U33;   PMID:17325220 "ChEMBL";   PMID:17341060 "ChEMBL";   PMID:3950402 "Europe PMC";   Wikipedia:Bromodeoxyuridine


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5-bromo-2'-deoxyuridine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef26 Rho guanine nucleotide exchange factor 26 JBrowse link 2 27,107,263 27,236,336 RGD:6480464
G Atoh8 atonal bHLH transcription factor 8 JBrowse link 4 100,067,341 100,099,517 RGD:6480464
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:6480464
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:6480464
G Ces2c carboxylesterase 2C JBrowse link 1 282,640,752 282,648,319 RGD:6480464
G Dnase1 deoxyribonuclease 1 JBrowse link 10 11,757,681 11,760,672 RGD:6480464
G Dusp6 dual specificity phosphatase 6 JBrowse link 7 41,475,163 41,479,393 RGD:6480464
G Dusp8 dual specificity phosphatase 8 JBrowse link 1 215,030,429 215,043,111 RGD:6480464
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:6480464
G Fam47e family with sequence similarity 47, member E JBrowse link 14 16,991,496 17,027,563 RGD:6480464
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 8 85,059,051 85,097,471 RGD:6480464
G Gdf15 growth differentiation factor 15 JBrowse link 16 20,555,395 20,557,978 RGD:6480464
G Gsta2 glutathione S-transferase alpha 2 JBrowse link 8 85,640,081 85,645,621 RGD:6480464
G Gsta6 glutathione S-transferase alpha 6 JBrowse link 9 27,475,273 27,533,939 RGD:6480464
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:6480464
G Itga5 integrin subunit alpha 5 JBrowse link 7 144,970,444 144,993,652 RGD:6480464
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:6480464
G Mogat2 monoacylglycerol O-acyltransferase 2 JBrowse link 1 164,181,762 164,205,222 RGD:6480464
G Msmo1 methylsterol monooxygenase 1 JBrowse link 16 26,859,441 26,875,880 RGD:6480464
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:6480464
G Ngfr nerve growth factor receptor JBrowse link 10 83,389,828 83,408,061 RGD:6480464
G Nmrk1 nicotinamide riboside kinase 1 JBrowse link 1 234,721,992 234,749,452 RGD:6480464
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:6480464
G P2ry1 purinergic receptor P2Y1 JBrowse link 2 151,314,818 151,320,312 RGD:6480464
G Pax3 paired box 3 JBrowse link 9 84,004,004 84,101,226 RGD:6480464
G Scgb1c1 secretoglobin, family 1C, member 1 JBrowse link 1 213,595,240 213,596,459 RGD:6480464
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:6480464
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:6480464
G Sqle squalene epoxidase JBrowse link 7 99,609,929 99,624,803 RGD:6480464
G Srxn1 sulfiredoxin 1 JBrowse link 3 147,608,850 147,614,410 RGD:6480464
G Stmn1 stathmin 1 JBrowse link 5 152,680,412 152,686,807 RGD:6480464
G Tnfrsf12a TNF receptor superfamily member 12A JBrowse link 10 12,995,904 12,997,930 RGD:6480464
G Trib3 tribbles pseudokinase 3 JBrowse link 3 147,814,056 147,819,650 RGD:6480464
G Tubb2a tubulin, beta 2A class IIa JBrowse link 17 31,493,145 31,496,827 RGD:6480464
G Txnrd1 thioredoxin reductase 1 JBrowse link 7 26,946,124 26,984,400 RGD:6480464
G Vsnl1 visinin-like 1 JBrowse link 6 37,001,360 37,121,969 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19734
    role 19680
      biological role 19678
        biochemical role 19177
          antimetabolite 8481
            5-bromo-2'-deoxyuridine 38
Path 2
Term Annotations click to browse term
  CHEBI ontology 19734
    subatomic particle 19730
      composite particle 19730
        hadron 19730
          baryon 19730
            nucleon 19730
              atomic nucleus 19730
                atom 19730
                  main group element atom 19614
                    p-block element atom 19614
                      carbon group element atom 19506
                        carbon atom 19500
                          organic molecular entity 19500
                            heteroorganic entity 19066
                              organochalcogen compound 18783
                                organooxygen compound 18696
                                  carbohydrates and carbohydrate derivatives 12112
                                    carbohydrate 12112
                                      carbohydrate derivative 11735
                                        glycosyl compound 10794
                                          N-glycosyl compound 5315
                                            nucleoside 5176
                                              deoxyribonucleoside 2705
                                                2'-deoxyribonucleoside 2188
                                                  pyrimidine 2'-deoxyribonucleoside 331
                                                    5-bromo-2'-deoxyuridine 38
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.