Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:tubercidin
go back to main search page
Accession:CHEBI:48267 term browser browse the term
Definition:An N-glycosylpyrrolopyrimidine that is adenosine in which the in the 5-membered ring that is not attached to the ribose moiety is replaced by a carbon. Tubercidin is produced in the culture broth of Streptomyces tubericidus.
Synonyms:related_synonym: 7-Deazaadenosine;   7-beta-D-ribofuranosyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine;   Formula=C11H14N4O4;   InChI=1S/C11H14N4O4/c12-9-5-1-2-15(10(5)14-4-13-9)11-8(18)7(17)6(3-16)19-11/h1-2,4,6-8,11,16-18H,3H2,(H2,12,13,14)/t6-,7-,8-,11-/m1/s1;   InChIKey=HDZZVAMISRMYHH-KCGFPETGSA-N;   SMILES=[C@@H]1([C@@H]([C@H](O)[C@H](O1)CO)O)N2C=3N=CN=C(C3C=C2)N;   Sparsomycin A
 alt_id: CHEBI:45836
 xref: Beilstein:38498 "Beilstein";   CAS:69-33-0 "ChemIDplus";   DrugBank:DB03172;   MetaCyc:CPD-13054;   PDBeChem:TBN;   Patent:US4316957


show annotations for term's descendants       view all columns           Sort by:
 
5-iodotubercidin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdkn1b cyclin-dependent kinase inhibitor 1B JBrowse link 4 168,689,043 168,694,159 RGD:6480464
G Clk1 CDC-like kinase 1 JBrowse link 9 65,296,777 65,308,017 RGD:6480464
G Clk2 CDC-like kinase 2 JBrowse link 2 188,476,789 188,488,809 RGD:6480464
G Clk3 CDC-like kinase 3 JBrowse link 8 62,528,135 62,543,550 RGD:6480464
G Clk4 CDC-like kinase 4 JBrowse link 10 36,715,565 36,733,473 RGD:6480464
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 11 34,858,339 34,958,733 RGD:6480464
G Dyrk1b dual specificity tyrosine phosphorylation regulated kinase 1B JBrowse link 1 85,112,819 85,120,840 RGD:6480464
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 JBrowse link 7 61,785,423 61,816,775 RGD:6480464
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 JBrowse link 13 47,906,230 47,916,877 RGD:6480464
G Dyrk4 dual specificity tyrosine phosphorylation regulated kinase 4 JBrowse link 4 159,426,447 159,467,973 RGD:6480464
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:6480464
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:6480464
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:6480464
G Olfm4 olfactomedin 4 JBrowse link 15 62,384,263 62,429,450 RGD:6480464
G Reg3b regenerating family member 3 beta JBrowse link 4 109,467,272 109,470,510 RGD:6480464
G Slc2a2 solute carrier family 2 member 2 JBrowse link 2 114,413,427 114,445,418 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19728
    role 19675
      biological role 19673
        biochemical role 19178
          antimetabolite 8470
            tubercidin 16
              (Rp)-7-bromo-7-deaza-cAMPS 0
              (Rp)-7-deaza-cAMPS 0
              (Rp)-8-bromo-7-deaza-cAMPS 0
              (Sp)-7-bromo-7-deaza-cAMPS 0
              (Sp)-8-bromo-7-deaza-cAMPS 0
              5-iodotubercidin 16
              7-deaza-8-chloro-cAMP 0
              7-deaza-cAMP 0
              7-deaza-cGMP 0
              TuMP 0
              sangivamycic acid 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19728
    subatomic particle 19724
      composite particle 19724
        hadron 19724
          baryon 19724
            nucleon 19724
              atomic nucleus 19724
                atom 19724
                  main group element atom 19610
                    p-block element atom 19610
                      carbon group element atom 19501
                        carbon atom 19494
                          organic molecular entity 19494
                            heteroorganic entity 19055
                              organochalcogen compound 18781
                                organooxygen compound 18694
                                  carbohydrates and carbohydrate derivatives 12101
                                    carbohydrate 12101
                                      carbohydrate derivative 11727
                                        glycosyl compound 10788
                                          N-glycosyl compound 5309
                                            nucleoside 5170
                                              ribonucleoside 689
                                                tubercidin 16
                                                  (Rp)-7-bromo-7-deaza-cAMPS 0
                                                  (Rp)-7-deaza-cAMPS 0
                                                  (Rp)-8-bromo-7-deaza-cAMPS 0
                                                  (Sp)-7-bromo-7-deaza-cAMPS 0
                                                  (Sp)-8-bromo-7-deaza-cAMPS 0
                                                  5-iodotubercidin 16
                                                  7-deaza-8-chloro-cAMP 0
                                                  7-deaza-cAMP 0
                                                  7-deaza-cGMP 0
                                                  TuMP 0
                                                  sangivamycic acid 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.