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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide residue
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Accession:CHEBI:50319 term browser browse the term
Synonyms:related_synonym: nucleotide residues


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poly(cytidylic acid) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 JBrowse link 10 42,441,723 42,760,200 RGD:6480464
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A JBrowse link 10 5,707,806 6,123,568 RGD:6480464
G Grin2c glutamate ionotropic receptor NMDA type subunit 2C JBrowse link 10 103,798,290 103,816,923 RGD:6480464
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:6480464
poly(guanylic acid) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acta2 actin alpha 2, smooth muscle JBrowse link 1 252,537,614 252,550,394 RGD:6480464
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:6480464
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:6480464
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:6480464
G Marco macrophage receptor with collagenous structure JBrowse link 16 85,115,199 85,147,683 RGD:6480464
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:6480464
poly(I:C) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:6480464
G Atf3 activating transcription factor 3 JBrowse link 13 109,817,892 109,849,632 RGD:6480464
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:6480464
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:6480464
G Bid BH3 interacting domain death agonist JBrowse link 4 153,439,812 153,465,247 RGD:6480464
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:6480464
G Ccl1 C-C motif chemokine ligand 1 JBrowse link 10 69,534,976 69,537,836 RGD:6480464
G Ccl11 C-C motif chemokine ligand 11 JBrowse link 10 69,434,965 69,439,566 RGD:6480464
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:6480464
G Ccl3 C-C motif chemokine ligand 3 JBrowse link 10 70,869,516 70,871,066 RGD:6480464
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:6480464
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:6480464
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:6480464
G Cd80 Cd80 molecule JBrowse link 11 64,815,201 64,855,293 RGD:6480464
G Cd83 CD83 molecule JBrowse link 17 24,416,651 24,435,790 RGD:6480464
G Cd86 CD86 molecule JBrowse link 11 67,060,305 67,117,990 RGD:6480464
G Cdx2 caudal type homeo box 2 JBrowse link 12 9,464,026 9,470,565 RGD:6480464
G Cnr2 cannabinoid receptor 2 JBrowse link 5 154,242,010 154,268,126 RGD:6480464
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:6480464
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:6480464
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:6480464
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:6480464
G Cxcl3 chemokine (C-X-C motif) ligand 3 JBrowse link 14 18,820,168 18,839,659 RGD:6480464
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Cyp2c11 cytochrome P450, subfamily 2, polypeptide 11 JBrowse link 1 257,676,172 258,004,428 RGD:6480464
G Cyp2c6v1 cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1 JBrowse link 1 147,713,879 147,814,410 RGD:6480464
G Cyp2c7 cytochrome P450, family 2, subfamily c, polypeptide 7 JBrowse link 1 147,422,999 148,119,979 RGD:6480464
G Cyp3a23/3a1 cytochrome P450, family 3, subfamily a, polypeptide 23/polypeptide 1 JBrowse link 12 11,053,888 11,082,742 RGD:6480464
G Ddx58 DEXD/H-box helicase 58 JBrowse link 5 56,486,584 56,536,898 RGD:6480464
G Defb4 defensin beta 4 JBrowse link 16 75,634,598 75,637,789 RGD:6480464
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:6480464
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 JBrowse link 6 1,428,845 1,466,193 RGD:6480464
G F11r F11 receptor JBrowse link 13 89,826,272 89,850,151 RGD:6480464
G Fabp4 fatty acid binding protein 4 JBrowse link 2 93,792,666 93,797,267 RGD:6480464
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:6480464
G Gfap glial fibrillary acidic protein JBrowse link 10 90,990,762 90,999,435 RGD:6480464
G Gh1 growth hormone 1 JBrowse link 10 94,486,204 94,488,181 RGD:6480464
G Gsr glutathione-disulfide reductase JBrowse link 16 62,197,617 62,239,987 RGD:6480464
G Gzmb granzyme B JBrowse link 15 35,413,862 35,417,293 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:6480464
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:6480464
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:6480464
G Htr2a 5-hydroxytryptamine receptor 2A JBrowse link 15 56,666,152 56,732,469 RGD:6480464
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link 16 72,216,326 72,228,098 RGD:6480464
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link 16 72,232,852 72,291,227 RGD:6480464
G Ifnb1 interferon beta 1 JBrowse link 5 106,865,192 106,865,746 RGD:6480464
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6480464
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:6480464
G Igfbp3 insulin-like growth factor binding protein 3 JBrowse link 14 87,457,647 87,465,374 RGD:6480464
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:6480464
G Il12a interleukin 12A JBrowse link 2 165,076,945 165,083,996 RGD:6480464
G Il12b interleukin 12B JBrowse link 10 30,034,447 30,048,774 RGD:6480464
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:6480464
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:6480464
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:6480464
G Il27 interleukin 27 JBrowse link 1 198,003,615 198,010,112 RGD:6480464
G Il33 interleukin 33 JBrowse link 1 248,112,611 248,147,030 RGD:6480464
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:6480464
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:6480464
G Irf3 interferon regulatory factor 3 JBrowse link 1 100,992,244 100,997,202 RGD:6480464
G Itgam integrin subunit alpha M JBrowse link 1 199,495,312 199,545,738 RGD:6480464
G Klf4 Kruppel like factor 4 JBrowse link 5 72,283,311 72,287,669 RGD:6480464
G Klrk1 killer cell lectin like receptor K1 JBrowse link 4 163,392,652 163,403,735 RGD:6480464
G Map3k11 mitogen-activated protein kinase kinase kinase 11 JBrowse link 1 221,043,119 221,056,420 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Mir155 microRNA 155 JBrowse link 11 24,176,603 24,176,667 RGD:6480464
G Mir26a microRNA 26a JBrowse link 8 127,714,441 127,714,530 RGD:6480464
G Msi1 musashi RNA-binding protein 1 JBrowse link 12 46,899,835 46,935,335 RGD:6480464
G Mx2 MX dynamin like GTPase 2 JBrowse link 11 38,035,306 38,066,185 RGD:6480464
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:6480464
G Myd88 MYD88, innate immune signal transduction adaptor JBrowse link 8 128,022,512 128,027,462 RGD:6480464
G Nfkbia NFKB inhibitor alpha JBrowse link 6 76,267,227 76,270,457 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Oas1a 2'-5' oligoadenylate synthetase 1A JBrowse link 12 41,200,680 41,211,393 RGD:6480464
G Oas2 2'-5' oligoadenylate synthetase 2 JBrowse link 12 41,341,417 41,363,124 RGD:6480464
G P2rx7 purinergic receptor P2X 7 JBrowse link 12 39,353,613 39,396,042 RGD:6480464
G P2ry2 purinergic receptor P2Y2 JBrowse link 1 166,031,228 166,045,423 RGD:6480464
G Plcb1 phospholipase C beta 1 JBrowse link 3 127,721,244 128,419,565 RGD:6480464
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:6480464
G Prf1 perforin 1 JBrowse link 20 30,915,294 30,920,804 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Rgs4 regulator of G-protein signaling 4 JBrowse link 13 88,054,817 88,061,108 RGD:6480464
G Sesn2 sestrin 2 JBrowse link 5 150,684,891 150,703,846 RGD:6480464
G Socs1 suppressor of cytokine signaling 1 JBrowse link 10 4,956,795 4,958,472 RGD:6480464
G Socs3 suppressor of cytokine signaling 3 JBrowse link 10 106,973,863 106,976,969 RGD:6480464
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:6480464
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:6480464
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:6480464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6480464
G Ticam1 toll-like receptor adaptor molecule 1 JBrowse link 9 10,780,185 10,790,280 RGD:6480464
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:6480464
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:6480464
G Tlr3 toll-like receptor 3 JBrowse link 16 50,016,466 50,031,011 RGD:6480464
G Tlr7 toll-like receptor 7 JBrowse link X 28,486,836 28,513,004 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464
G Tnfsf10 TNF superfamily member 10 JBrowse link 2 113,008,008 113,026,899 RGD:6480464
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:6480464
G Traf6 TNF receptor associated factor 6 JBrowse link 3 91,252,829 91,271,607 RGD:6480464
G Tslp thymic stromal lymphopoietin JBrowse link 18 25,613,601 25,618,066 RGD:6480464
G Txn1 thioredoxin 1 JBrowse link 5 75,049,735 75,057,731 RGD:6480464
G Ugt2b17 UDP glucuronosyltransferase family 2 member B17 JBrowse link 14 22,724,399 22,736,148 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    chemical entity 19667
      group 19582
        organic group 18343
          nucleotide residue 119
            2'-O-methyladenosine 5'-monophosphate residue 0
            2'-O-methylcytidine 5'-monophosphate residue 0
            2'-O-methylguanosine 5'-monophosphate residue 0
            2'-O-methyluridine 5'-monophosphate residue 0
            2-methyladenosine 5'-monophosphate residue 0
            2-methylthio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate residue 0
            2-methylthio-N(6)-dimethylallyladenine 5'-monophosphate residue 0
            2-thio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate residue 0
            2-thio-N(6)-dimethylallyladenine 5'-monophosphate residue 0
            4-demethyl-7-(3-amino-3-carboxypropyl)wyosine 5'-monophosphate residue 0
            4-demethylwyosine 5'-monophosphate residue 0
            5,6-dihydrouridine 5'-monophosphate residue 0
            5-(2-methoxy-2-oxoethyl)uridine 5'-monophosphate residue 0
            5-(carboxymethyl)uridine 5'-monophosphate residue 0
            5-aminomethyl-2-thiouridine 5'-monophosphate residue 0
            5-carboxymethylaminomethyl-2'-O-methyluridine 5'-monophosphate residue 0
            5-carboxymethylaminomethyluridine 5'-monophosphate residue 0
            5-hydroxymethylcytidine 5'-monophosphate residue 0
            5-methylaminomethyl-2-thiouridine 5'-monophosphate residue 0
            5-methylcytidine 5'-monophosphate residue 0
            5-methyluridine 5'-monophosphate residue 0
            7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine 5'-monophosphate residue 0
            7-[(3S)-(3-amino-3-methoxycarbonyl)propyl]wyosine 5'-phosphate residue 0
            7-[(3S-amino)-3-carboxypropyl]wyosine 5'-monophosphate residue 0
            8-methyladenosine 5'-monophosphate residue 0
            N(1)-methyladenosine 5'-monophosphate residue 0
            N(1)-methylguanosine 5'-monophosphate residue 0
            N(1)-methylpseudouridine 5'-monophosphate residue 0
            N(2),N(2)-dimethylguanosine 5'-monophosphate residue 0
            N(2)-methylguanosine 5'-monophosphate residue 0
            N(3)-methylcytidine 5'-monophosphate residue 0
            N(3)-methylpseudouridine 5'-monophosphate residue 0
            N(3)-methyluridine 5'-monophosphate residue 0
            N(4)-acetylcytidine 5'-monophosphate residue 0
            N(4)-methylcytidine 5'-monophosphate residue 0
            N(6),N(6)-dimethyladenosine 5'-monophosphate residue 0
            N(6)-L-threonylcarbamoyladenine 5'-monophosphate residue 0
            N(6)-dimethylallyladenine 5'-monophosphate residue 0
            N(6)-methyladenosine 5'-monophosphate residue 0
            beta-hydroxywybutosine 5'-monophosphate residue 0
            canonical nucleotide residue + 119
            cyclobutadithymidine residue 0
            deoxyribonucleotide residue + 0
            locked nucleotide residue + 0
            lysine monophosphate residue 0
            polynucleotide + 119
            pseudouridine 5'-phosphate residue 0
            ribonucleotide residue + 0
            wybutosine 5'-monophosphate residue 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    p-block element atom 19545
                      carbon group element atom 19428
                        carbon group molecular entity 19428
                          organic molecular entity 19420
                            organic group 18343
                              nucleotide residue 119
                                2'-O-methyladenosine 5'-monophosphate residue 0
                                2'-O-methylcytidine 5'-monophosphate residue 0
                                2'-O-methylguanosine 5'-monophosphate residue 0
                                2'-O-methyluridine 5'-monophosphate residue 0
                                2-methyladenosine 5'-monophosphate residue 0
                                2-methylthio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate residue 0
                                2-methylthio-N(6)-dimethylallyladenine 5'-monophosphate residue 0
                                2-thio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate residue 0
                                2-thio-N(6)-dimethylallyladenine 5'-monophosphate residue 0
                                4-demethyl-7-(3-amino-3-carboxypropyl)wyosine 5'-monophosphate residue 0
                                4-demethylwyosine 5'-monophosphate residue 0
                                5,6-dihydrouridine 5'-monophosphate residue 0
                                5-(2-methoxy-2-oxoethyl)uridine 5'-monophosphate residue 0
                                5-(carboxymethyl)uridine 5'-monophosphate residue 0
                                5-aminomethyl-2-thiouridine 5'-monophosphate residue 0
                                5-carboxymethylaminomethyl-2'-O-methyluridine 5'-monophosphate residue 0
                                5-carboxymethylaminomethyluridine 5'-monophosphate residue 0
                                5-hydroxymethylcytidine 5'-monophosphate residue 0
                                5-methylaminomethyl-2-thiouridine 5'-monophosphate residue 0
                                5-methylcytidine 5'-monophosphate residue 0
                                5-methyluridine 5'-monophosphate residue 0
                                7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine 5'-monophosphate residue 0
                                7-[(3S)-(3-amino-3-methoxycarbonyl)propyl]wyosine 5'-phosphate residue 0
                                7-[(3S-amino)-3-carboxypropyl]wyosine 5'-monophosphate residue 0
                                8-methyladenosine 5'-monophosphate residue 0
                                N(1)-methyladenosine 5'-monophosphate residue 0
                                N(1)-methylguanosine 5'-monophosphate residue 0
                                N(1)-methylpseudouridine 5'-monophosphate residue 0
                                N(2),N(2)-dimethylguanosine 5'-monophosphate residue 0
                                N(2)-methylguanosine 5'-monophosphate residue 0
                                N(3)-methylcytidine 5'-monophosphate residue 0
                                N(3)-methylpseudouridine 5'-monophosphate residue 0
                                N(3)-methyluridine 5'-monophosphate residue 0
                                N(4)-acetylcytidine 5'-monophosphate residue 0
                                N(4)-methylcytidine 5'-monophosphate residue 0
                                N(6),N(6)-dimethyladenosine 5'-monophosphate residue 0
                                N(6)-L-threonylcarbamoyladenine 5'-monophosphate residue 0
                                N(6)-dimethylallyladenine 5'-monophosphate residue 0
                                N(6)-methyladenosine 5'-monophosphate residue 0
                                beta-hydroxywybutosine 5'-monophosphate residue 0
                                canonical nucleotide residue + 119
                                cyclobutadithymidine residue 0
                                deoxyribonucleotide residue + 0
                                locked nucleotide residue + 0
                                lysine monophosphate residue 0
                                polynucleotide + 119
                                pseudouridine 5'-phosphate residue 0
                                ribonucleotide residue + 0
                                wybutosine 5'-monophosphate residue 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.