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ONTOLOGY REPORT - ANNOTATIONS


Term:fucoidan
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Accession:CHEBI:5181 term browser browse the term
Definition:A type of fucose-rich sulfated polysaccharide found in various species of brown algae, seaweed and sea-cucumbers.
Synonyms:related_synonym: Fucan sulfate;   Fucoidin;   Laminaria japonica extract;   Sulfated fucans
 xref: CAS:9072-19-9 "ChemIDplus";   CAS:9072-19-9 "KEGG COMPOUND";   KEGG:C08253
 xref_mesh: MESH:C007789
 xref: MetaCyc:Fucoidans;   PMID:25141794 "Europe PMC";   PMID:25407449 "Europe PMC";   PMID:25439948 "Europe PMC";   PMID:25445688 "Europe PMC";   PMID:25451746 "Europe PMC";   PMID:25453283 "Europe PMC";   PMID:25546518 "Europe PMC";   PMID:25572360 "Europe PMC";   PMID:25605994 "Europe PMC";   PMID:25606812 "Europe PMC";   PMID:25672488 "Europe PMC";   PMID:25690093 "Europe PMC";   PMID:25692870 "Europe PMC";   PMID:25693733 "Europe PMC";   PMID:25706632 "Europe PMC";   PMID:25766803 "Europe PMC";   Reaxys:8189694 "Reaxys";   Wikipedia:Fucoidan


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fucoidan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Birc2 baculoviral IAP repeat-containing 2 JBrowse link 8 6,014,014 6,036,668 RGD:6480464
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:6480464
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:6480464
G Ccnd2 cyclin D2 JBrowse link 4 159,674,885 159,697,207 RGD:6480464
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:6480464
G Gast gastrin JBrowse link 10 88,245,532 88,248,485 RGD:6480464
G Gpt glutamic--pyruvic transaminase JBrowse link 7 117,759,083 117,761,932 RGD:6480464
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6480464
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:6480464
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:6480464
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:6480464
G Jund JunD proto-oncogene, AP-1 transcription factor subunit JBrowse link 16 20,485,028 20,486,707 RGD:6480464
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:6480464
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:6480464
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:6480464
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:6480464
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:6480464
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:6480464
G Rel REL proto-oncogene, NF-kB subunit JBrowse link 14 108,490,794 108,517,582 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19728
    role 19675
      chemical role 19189
        antioxidant 14093
          fucoidan 23
Path 2
Term Annotations click to browse term
  CHEBI ontology 19728
    subatomic particle 19724
      composite particle 19724
        hadron 19724
          baryon 19724
            nucleon 19724
              atomic nucleus 19724
                atom 19724
                  main group element atom 19610
                    p-block element atom 19610
                      chalcogen 19322
                        oxygen atom 19283
                          oxygen molecular entity 19283
                            hydroxides 19042
                              oxoacid 18106
                                chalcogen oxoacid 11403
                                  sulfur oxoacid 10994
                                    sulfuric acid 7915
                                      sulfuric acid derivative 7915
                                        sulfates 7912
                                          organic sulfate 1812
                                            carbohydrate sulfate 1283
                                              polysaccharide sulfate 1175
                                                fucoidan 23
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.