Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:all-trans-4-hydroxyretinoic acid
go back to main search page
Accession:CHEBI:63795 term browser browse the term
Definition:A retinoid that consists of all-trans-retinoic acid bearing a hydroxy substituent at position 4 on the cyclohexenyl ring.
Synonyms:exact_synonym: 4-hydroxyretinoic acid
 related_synonym: (2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethyl-3-hydroxy-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid;   (2E,4E,6E,8E)-9-(3-hydroxy-2,6,6-trimethyl-1-cyclohexenyl)-3,7-dimethyl-nona-2,4,6,8-tetraenoic acid;   (7E,9E,11E,13E)-4-hydroxyretinoic acid;   4-hydroxy-(7E,9E,11E,13E)-retinoic acid;   4-hydroxy-all-trans-retinoic acid;   Formula=C20H28O3;   InChI=1S/C20H28O3/c1-14(7-6-8-15(2)13-19(22)23)9-10-17-16(3)18(21)11-12-20(17,4)5/h6-10,13,18,21H,11-12H2,1-5H3,(H,22,23)/b8-6+,10-9+,14-7+,15-13+;   InChIKey=KGUMXGDKXYTTEY-FRCNGJHJSA-N;   SMILES=CC(\\C=C\\C1=C(C)C(O)CCC1(C)C)=C/C=C/C(C)=C/C(O)=O
 xref: CAS:66592-72-1 "ChemIDplus";   HMDB:HMDB0006254;   KEGG:C16677;   LIPID_MAPS_instance:LMPR01090025 "LIPID MAPS"
 xref_mesh: MESH:C019429
 xref: PMID:10702251 "Europe PMC";   PMID:1328295 "Europe PMC";   Reaxys:2879131 "Reaxys"
 cyclic_relationship: is_conjugate_acid_of CHEBI:134178


show annotations for term's descendants       view all columns           Sort by:
 
all-trans-4-hydroxyretinoic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 1 256,382,861 256,386,729 RGD:6480464
G Cyp2c79 cytochrome P450, family 2, subfamily c, polypeptide 79 JBrowse link 1 147,236,480 147,307,988 RGD:6480464
G Muc2 mucin 2, oligomeric mucus/gel-forming JBrowse link 1 214,663,929 214,693,197 RGD:6480464
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:6480464
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:6480464
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:6480464
G Rarg retinoic acid receptor, gamma JBrowse link 7 143,840,739 143,863,206 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19716
    role 19663
      chemical role 19171
        antioxidant 14106
          all-trans-retinoic acid 7369
            all-trans-4-hydroxyretinoic acid 8
              (4S)-4,16-dihydroxyretinoic acid 0
              (S)-all-trans-4-hydroxyretinoic acid 0
              4-(beta-D-glucopyranuronosyloxy)retinoic acid 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19716
    subatomic particle 19712
      composite particle 19712
        hadron 19712
          baryon 19712
            nucleon 19712
              atomic nucleus 19712
                atom 19712
                  main group element atom 19598
                    p-block element atom 19598
                      carbon group element atom 19486
                        carbon atom 19480
                          organic molecular entity 19480
                            organic group 18407
                              organic divalent group 18397
                                organodiyl group 18397
                                  carbonyl group 18285
                                    carbonyl compound 18285
                                      carboxylic acid 17940
                                        monocarboxylic acid 17260
                                          alpha,beta-unsaturated monocarboxylic acid 11349
                                            retinoic acid 7630
                                              all-trans-retinoic acid 7369
                                                all-trans-4-hydroxyretinoic acid 8
                                                  (4S)-4,16-dihydroxyretinoic acid 0
                                                  (S)-all-trans-4-hydroxyretinoic acid 0
                                                  4-(beta-D-glucopyranuronosyloxy)retinoic acid 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.