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ONTOLOGY REPORT - ANNOTATIONS


Term:lincomycin
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Accession:CHEBI:6472 term browser browse the term
Definition:A carbohydrate-containing antibiotic produced by the actinomyces Streptomyces lincolnensis.
Synonyms:exact_synonym: methyl 6,8-dideoxy-6-({[(2S,4R)-1-methyl-4-propylpyrrolidin-2-yl]carbonyl}amino)-1-thio-D-erythro-alpha-D-galacto-octopyranoside
 related_synonym: Cillimycin;   Formula=C18H34N2O6S;   InChI=1S/C18H34N2O6S/c1-5-6-10-7-11(20(3)8-10)17(25)19-12(9(2)21)16-14(23)13(22)15(24)18(26-16)27-4/h9-16,18,21-24H,5-8H2,1-4H3,(H,19,25)/t9-,10-,11?,12-,13+,14-,15-,16-,18-/m1/s1;   InChIKey=OJMMVQQUTAEWLP-KIDUDLJLSA-N;   Methyl 6,8-dideoxy-6-trans-(1-methyl-4-propyl-L-2-pyrrolidinecarboxamido)-1-thio-D-erythro-alpha-D-galacto-octopyranoside;   SMILES=CCC[C@@H]1C[C@H](N(C)C1)C(=O)N[C@H]([C@@H](C)O)[C@H]1O[C@H](SC)[C@H](O)[C@@H](O)[C@H]1O;   lincomicina;   lincomycine;   lincomycinum
 xref: CAS:154-21-2 "ChemIDplus";   CAS:154-21-2 "KEGG COMPOUND";   DrugBank:DB01627;   Drug_Central:1582 "DrugCentral";   HMDB:HMDB0015564;   KEGG:C06812;   KEGG:C14002;   KEGG:D00223;   KEGG:D02346;   LINCS:LSM-5602
 xref_mesh: MESH:D008034
 xref: PMID:24324587 "Europe PMC";   Reaxys:707677 "Reaxys";   Wikipedia:Lincomycin


show annotations for term's descendants       view all columns           Sort by:
 
lincomycin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mr1 major histocompatibility complex, class I-related JBrowse link 13 72,771,992 72,789,861 RGD:6480464
G RT1-S3 RT1 class Ib, locus S3 JBrowse link 20 3,176,124 3,180,825 RGD:6480464
clindamycin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mmp13 matrix metallopeptidase 13 JBrowse link 8 5,522,739 5,533,018 RGD:6480464
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:6480464
G RT1-S3 RT1 class Ib, locus S3 JBrowse link 20 3,176,124 3,180,825 RGD:6480464
clindamycin phosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pon1 paraoxonase 1 JBrowse link 4 30,249,749 30,276,297 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19764
    role 19711
      biological role 19710
        antimicrobial agent 17242
          lincomycin 5
            clindamycin + 4
Path 2
Term Annotations click to browse term
  CHEBI ontology 19764
    subatomic particle 19762
      composite particle 19762
        hadron 19762
          baryon 19762
            nucleon 19762
              atomic nucleus 19762
                atom 19762
                  main group element atom 19646
                    p-block element atom 19646
                      carbon group element atom 19540
                        carbon atom 19529
                          organic molecular entity 19529
                            organic group 18432
                              organic divalent group 18423
                                organodiyl group 18423
                                  carbonyl group 18311
                                    carbonyl compound 18311
                                      carboxylic acid 17978
                                        carboacyl group 17095
                                          univalent carboacyl group 17095
                                            carbamoyl group 16817
                                              carboxamide 16817
                                                monocarboxylic acid amide 14173
                                                  pyrrolidinecarboxamide 6
                                                    lincomycin 5
                                                      clindamycin + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.