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ONTOLOGY REPORT - ANNOTATIONS


Term:5-(hydroxymethyl)cytosine
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Accession:CHEBI:76792 term browser browse the term
Definition:A nucleobase analogue that is cytosine in which the hydrogen at position 5 is replaced by a hydroxymethyl group.
Synonyms:exact_synonym: 4-amino-5-(hydroxymethyl)pyrimidin-2(1H)-one
 related_synonym: 4-Amino-5-(hydroxymethyl)-2(1H)-pyrimidinone;   5-hydroxymethylcytosine;   Formula=C5H7N3O2;   InChI=1S/C5H7N3O2/c6-4-3(2-9)1-7-5(10)8-4/h1,9H,2H2,(H3,6,7,8,10);   InChIKey=RYVNIFSIEDRLSJ-UHFFFAOYSA-N;   SMILES=Nc1nc(=O)[nH]cc1CO
 xref: CAS:1123-95-1 "ChemIDplus"
 xref_mesh: MESH:C011865
 xref: MetaCyc:CPD-15531;   PMID:19372391 "SUBMITTER";   PMID:21151123 "Europe PMC";   PMID:21778364 "SUBMITTER";   PMID:24162071 "Europe PMC";   PMID:24162993 "Europe PMC";   PMID:24295785 "Europe PMC";   PMID:24315686 "Europe PMC";   PMID:24390216 "Europe PMC";   PMID:24400731 "Europe PMC";   PMID:26715454 "Europe PMC";   PMID:26753520 "Europe PMC";   PMID:26851753 "Europe PMC";   PMID:27001475 "Europe PMC";   Reaxys:125478 "Reaxys";   Wikipedia:5-Hydroxymethylcytosine


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5-(hydroxymethyl)cytosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:6480464
G Cmahp cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene JBrowse link 17 42,567,472 42,640,221 RGD:6480464
G Ftl1 ferritin light chain 1 JBrowse link 1 101,448,190 101,450,034 RGD:6480464
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:6480464
G Grb10 growth factor receptor bound protein 10 JBrowse link 14 92,021,851 92,122,249 RGD:6480464
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:6480464
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 1 216,293,087 216,630,339 RGD:6480464
G Klf14 Kruppel-like factor 14 JBrowse link 4 58,247,876 58,250,798 RGD:6480464
G Pde10a phosphodiesterase 10A JBrowse link 1 52,360,296 52,544,448 RGD:6480464
G Pde4d phosphodiesterase 4D JBrowse link 2 40,219,999 41,468,551 RGD:6480464
G Plagl1 PLAG1 like zinc finger 1 JBrowse link 1 7,219,587 7,270,169 RGD:6480464
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A JBrowse link 4 29,976,485 30,247,371 RGD:6480464
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:6480464
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:6480464
G Ubc ubiquitin C JBrowse link 12 36,638,457 36,642,734 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    role 19613
      application 19235
        refrigerant 16994
          ammonia 16561
            organic amino compound 16560
              aromatic amine 13572
                aminopyrimidine 1033
                  5-(hydroxymethyl)cytosine 15
                    5-(beta-D-glucosylmethyl)cytosine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    main group molecular entity 19545
                      s-block molecular entity 19329
                        hydrogen molecular entity 19319
                          hydrides 18242
                            inorganic hydride 17104
                              pnictogen hydride 17062
                                nitrogen hydride 16885
                                  azane 16564
                                    ammonia 16561
                                      organic amino compound 16560
                                        aromatic amine 13572
                                          aminopyrimidine 1033
                                            cytosine 929
                                              5-(hydroxymethyl)cytosine 15
                                                5-(beta-D-glucosylmethyl)cytosine 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.