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ONTOLOGY REPORT - ANNOTATIONS


Term:prodigiosin
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Accession:CHEBI:82758 term browser browse the term
Definition:A member of the class of tripyrroles that is a red-coloured pigment with antibiotic properties produced by Serratia marcescens.
Synonyms:exact_synonym: 4-methoxy-5-[(Z)-(5-methyl-4-pentyl-2H-pyrrol-2-ylidene)methyl]-1H,1'H-2,2'-bipyrrole
 related_synonym: 4-Methoxy-5-((5-methyl-4-pentyl-2H-pyrrol-2-ylidene)methyl)-2,2'-bipyrrole;   Formula=C20H25N3O;   InChI=1S/C20H25N3O/c1-4-5-6-8-15-11-16(22-14(15)2)12-19-20(24-3)13-18(23-19)17-9-7-10-21-17/h7,9-13,21,23H,4-6,8H2,1-3H3/b16-12-;   InChIKey=SZXDNGVQRDTJSD-VBKFSLOCSA-N;   SMILES=CCCCCC1=C\\C(=C\\c2[nH]c(cc2OC)-c2ccc[nH]2)N=C1C
 xref: CAS:82-89-3 "ChemIDplus"
 xref_mesh: MESH:D011353
 xref: MetaCyc:CPD-16992 "SUBMITTER";   PMID:15853884 "SUBMITTER";   PMID:24247721 "Europe PMC";   PMID:24372158 "Europe PMC";   PMID:24440841 "Europe PMC";   PMID:24587717 "Europe PMC";   PMID:24619531 "Europe PMC";   PMID:24781979 "Europe PMC";   PMID:24817724 "Europe PMC";   PMID:25063175 "Europe PMC";   PMID:25199250 "Europe PMC";   PMID:25201292 "Europe PMC";   Reaxys:4526727 "Reaxys";   Wikipedia:Prodigiosin


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prodigiosin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:6480464
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464
G Cybb cytochrome b-245 beta chain JBrowse link X 14,578,330 14,610,049 RGD:6480464
G Nfkbia NFKB inhibitor alpha JBrowse link 6 76,267,227 76,270,457 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:6480464
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19716
    role 19663
      biological role 19661
        antimicrobial agent 17199
          prodigiosin 11
Path 2
Term Annotations click to browse term
  CHEBI ontology 19716
    subatomic particle 19712
      composite particle 19712
        hadron 19712
          baryon 19712
            nucleon 19712
              atomic nucleus 19712
                atom 19712
                  main group element atom 19598
                    p-block element atom 19598
                      carbon group element atom 19486
                        carbon atom 19480
                          organic molecular entity 19480
                            organic molecule 19402
                              organic cyclic compound 19158
                                organic heterocyclic compound 18245
                                  organonitrogen heterocyclic compound 17034
                                    polypyrrole 591
                                      tripyrrole 11
                                        prodigiosin 11
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.