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ONTOLOGY REPORT - ANNOTATIONS


Term:skatole
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Accession:CHEBI:9171 term browser browse the term
Definition:A methylindole carrying a methyl substituent at position 3. It is produced during the anoxic metabolism of L-tryptophan in the mammalian digestive tract.
Synonyms:related_synonym: 3-Methylindole;   3-methyl-1H-indole;   3-methyl-4,5-benzopyrrole;   Formula=C9H9N;   InChI=1S/C9H9N/c1-7-6-10-9-5-3-2-4-8(7)9/h2-6,10H,1H3;   InChIKey=ZFRKQXVRDFCRJG-UHFFFAOYSA-N;   SMILES=Cc1c[nH]c2ccccc12;   Skatol;   beta-methylindole
 xref: Beilstein:111296 "Beilstein";   CAS:83-34-1 "ChemIDplus";   CAS:83-34-1 "KEGG COMPOUND";   CAS:83-34-1 "NIST Chemistry WebBook";   Gmelin:396961 "Gmelin";   HMDB:HMDB0000466;   KEGG:C08313;   KNApSAcK:C00001430;   LINCS:LSM-3655
 xref_mesh: MESH:D012862
 xref: MetaCyc:SKATOLE;   PMID:16656260 "Europe PMC";   PMID:22950976 "Europe PMC";   PMID:24358366 "Europe PMC";   PMID:7487051 "Europe PMC";   Reaxys:111296 "Reaxys";   Wikipedia:Skatole


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skatole term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 8 62,451,360 62,458,244 RGD:6480464
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 JBrowse link 6 2,308,179 2,316,739 RGD:6480464
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 1 213,511,892 213,522,195 RGD:6480464
G Cyp2f4 cytochrome P450, family 2, subfamily f, polypeptide 4 JBrowse link 1 83,933,974 83,947,804 RGD:6480464
G Cyp4b1 cytochrome P450, family 4, subfamily b, polypeptide 1 JBrowse link 5 134,508,728 134,526,103 RGD:6480464
G Nr1i2 nuclear receptor subfamily 1, group I, member 2 JBrowse link 11 65,022,100 65,058,546 RGD:6480464
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:6480464
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19716
    role 19663
      biological role 19661
        biochemical role 19179
          metabolite 19151
            eukaryotic metabolite 18770
              animal metabolite 18511
                mammalian metabolite 18493
                  skatole 10
Path 2
Term Annotations click to browse term
  CHEBI ontology 19716
    subatomic particle 19712
      composite particle 19712
        hadron 19712
          baryon 19712
            nucleon 19712
              atomic nucleus 19712
                atom 19712
                  main group element atom 19598
                    p-block element atom 19598
                      carbon group element atom 19486
                        carbon atom 19480
                          organic molecular entity 19480
                            organic molecule 19402
                              organic cyclic compound 19158
                                organic heterocyclic compound 18245
                                  organic heteropolycyclic compound 17500
                                    organic heterobicyclic compound 15910
                                      benzopyrrole 5757
                                        indoles 5532
                                          methylindole 1271
                                            skatole 10
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.