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ONTOLOGY REPORT - ANNOTATIONS


Term:small cell carcinoma
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Accession:DOID:0050685 term browser browse the term
Definition:An anaplastic, highly malignant, and usually bronchogenic carcinoma composed of small ovoid cells with scanty neoplasm. It is characterized by a dominant, deeply basophilic nucleus, and absent or indistinct nucleoli. (From Stedman, 25th ed; Holland et al., Cancer Medicine, 3d ed, p1286-7)
Synonyms:exact_synonym: SCCL;   SCLC;   SCLC1;   oat cell carcinoma;   oat cell carcinomas;   small cell carcinoma, intermediate cell;   small cell carcinomas
 primary_id: MESH:D018288
 alt_id: OMIM:182280;   RDO:0001325
 xref: NCI:C4099
For additional species annotation, visit the Alliance of Genome Resources.


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small cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:11554173
G Chi3l1 chitinase 3 like 1 JBrowse link 13 51,022,844 51,030,797 RGD:4892640
G Chrm3 cholinergic receptor, muscarinic 3 JBrowse link 17 63,990,599 64,463,222 RGD:5133439
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:4143263
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:11554173
G Nppa natriuretic peptide A JBrowse link 5 164,808,407 164,809,716 RGD:11554173
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:5135003
G Pycard PYD and CARD domain containing JBrowse link 1 199,438,029 199,439,062 RGD:11554173
G Rassf1 Ras association domain family member 1 JBrowse link 8 116,307,149 116,318,289 RGD:2291977
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:7240710
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4142840
G Tnfsf10 TNF superfamily member 10 JBrowse link 2 113,008,008 113,026,899 RGD:2312747
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:11554173
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 JBrowse link 9 95,295,701 95,302,822 RGD:11554173
G Wif1 Wnt inhibitory factor 1 JBrowse link 7 63,094,955 63,165,158 RGD:727214
esophagus small cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Krt14 keratin 14 JBrowse link 10 88,118,029 88,122,233 RGD:1600174
lung small cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcy1 adenylate cyclase 1 JBrowse link 14 87,311,970 87,429,880 RGD:11554173
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:11554173
G Avp arginine vasopressin JBrowse link 3 123,117,482 123,119,460 RGD:11554173
G B2m beta-2 microglobulin JBrowse link 3 114,087,287 114,093,311 RGD:8554872
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:13673911
G Bclaf1 BCL2-associated transcription factor 1 JBrowse link 1 15,799,753 15,828,838 RGD:11554173
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:13673912
G Cdkn1b cyclin-dependent kinase inhibitor 1B JBrowse link 4 168,689,043 168,694,159 RGD:13673920
G Cdyl chromodomain Y-like JBrowse link 17 29,672,925 29,895,416 RGD:11554173
G Ckb creatine kinase B JBrowse link 6 136,142,956 136,145,838 RGD:11554173
G Cntnap2 contactin associated protein 2 JBrowse link 4 74,700,539 77,025,463 RGD:11554173
G Col22a1 collagen type XXII alpha 1 chain JBrowse link 7 113,014,896 113,251,165 RGD:11554173
G Col4a2 collagen type IV alpha 2 chain JBrowse link 16 83,386,388 83,522,169 RGD:11554173
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:11554173
G Csf3 colony stimulating factor 3 JBrowse link 10 86,616,785 86,619,160 RGD:11554173
G Dip2c disco-interacting protein 2 homolog C JBrowse link 17 63,426,688 63,810,183 RGD:11554173
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:9589086
G E2f1 E2F transcription factor 1 JBrowse link 3 150,062,895 150,073,721 RGD:13464335
RGD:13464344
RGD:13464337
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:11554173
G Elavl2 ELAV like RNA binding protein 2 JBrowse link 5 109,499,410 109,651,829 RGD:11554173
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:11554173
G Epha7 Eph receptor A7 JBrowse link 5 43,602,744 43,761,198 RGD:11554173
G Fgfr1 Fibroblast growth factor receptor 1 JBrowse link 16 71,265,390 71,319,046 RGD:11554173
G Grik3 glutamate ionotropic receptor kainate type subunit 3 JBrowse link 5 143,500,441 143,715,546 RGD:11554173
G Grm8 glutamate metabotropic receptor 8 JBrowse link 4 54,474,344 55,409,526 RGD:11554173
G Id2 inhibitor of DNA binding 2 JBrowse link 6 44,360,077 44,361,908 RGD:11554173
G Insm1 INSM transcriptional repressor 1 JBrowse link 3 140,427,961 140,430,467 RGD:11554173
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:13792831
RGD:13792832
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:11554173
G Kif21a kinesin family member 21A JBrowse link 7 132,069,962 132,200,947 RGD:11554173
G Kit KIT proto-oncogene receptor tyrosine kinase JBrowse link 14 35,072,131 35,149,638 RGD:11554173
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:11554173
G Lama3 laminin subunit alpha 3 JBrowse link 18 3,704,866 3,941,215 RGD:13793369
G Lamb3 laminin subunit beta 3 JBrowse link 13 112,031,614 112,073,187 RGD:13793369
G Lamc2 laminin subunit gamma 2 JBrowse link 13 70,566,643 70,632,126 RGD:13793369
G Lyrm9 LYR motif containing 9 JBrowse link 10 66,099,478 66,113,559 RGD:11554173
G Max MYC associated factor X JBrowse link 6 99,984,260 100,011,460 RGD:13793386
G Mthfr methylenetetrahydrofolate reductase JBrowse link 5 164,844,642 164,864,360 RGD:4891158
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:13825123
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:13793389
G Mycl MYCL proto-oncogene, bHLH transcription factor JBrowse link 5 140,691,947 140,698,837 RGD:11554173
G Ndrg1 N-myc downstream regulated 1 JBrowse link 7 107,734,326 107,775,701 RGD:11554173
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:13825123
G Plscr4 phospholipid scramblase 4 JBrowse link 8 99,880,073 99,917,733 RGD:11554173
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:11554173
RGD:8554872
G Ptk2 protein tyrosine kinase 2 JBrowse link 7 114,436,419 114,611,317 RGD:13825133
RGD:13825141
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:13825142
G Rassf8 Ras association domain family member 8 JBrowse link 4 180,059,020 180,135,924 RGD:11554173
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:11554173
RGD:8554872
G Rims2 regulating synaptic membrane exocytosis 2 JBrowse link 7 78,091,998 78,594,164 RGD:11554173
G Runx1t1 RUNX1 partner transcriptional co-repressor 1 JBrowse link 5 27,284,921 27,440,802 RGD:11554173
G Satb2 SATB homeobox 2 JBrowse link 9 63,456,877 63,642,193 RGD:11554173
G Skp2 S-phase kinase associated protein 2 JBrowse link 2 58,506,146 58,534,211 RGD:13825152
G Slit2 slit guidance ligand 2 JBrowse link 14 66,831,848 67,171,491 RGD:11554173
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:11554173
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:11554173
G Tmem132d transmembrane protein 132D JBrowse link 12 31,934,343 32,607,768 RGD:11554173
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:11554173
RGD:8554872
G Xpo5 exportin 5 JBrowse link 9 17,125,201 17,163,170 RGD:11041738
G Zdbf2 zinc finger, DBF-type containing 2 JBrowse link 9 70,052,088 70,090,847 RGD:11554173

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  disease 15850
    disease of cellular proliferation 5876
      cancer 4208
        cell type cancer 3076
          carcinoma 2070
            small cell carcinoma 75
              Bartholin's gland small cell carcinoma 0
              Desmoplastic Cerebral Astrocytoma of Infancy 0
              ampulla of Vater small cell carcinoma 0
              colon small cell carcinoma 0
              endometrial small cell carcinoma 0
              esophagus small cell carcinoma 1
              gallbladder small cell carcinoma 0
              gastric small cell carcinoma 0
              laryngeal small cell carcinoma 0
              lung small cell carcinoma + 62
              prostate small cell carcinoma 0
              thymus small cell carcinoma 0
              ureter small cell carcinoma 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.