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ONTOLOGY REPORT - ANNOTATIONS


Term:autoimmune disease of skin and connective tissue
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Accession:DOID:0060039 term browser browse the term
Definition:An autoimmune hypersensitivity disease that is the abnormal functioning of the immune system that causes your immune system to produce antibodies or T cells against cells and/or tissues in the skin and connective tissue. (DO)
Synonyms:primary_id: RDO:9003704
For additional species annotation, visit the Alliance of Genome Resources.


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alopecia areata term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 JBrowse link 9 67,699,397 67,706,068 RGD:7411701
RGD:11554173
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:11554173
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:11554173
G Cxcr3 C-X-C motif chemokine receptor 3 JBrowse link X 71,614,346 71,616,997 RGD:11554173
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:9587460
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:9587460
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:9587460
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:9587460
G Hdac7 histone deacetylase 7 JBrowse link 7 139,280,396 139,319,108 RGD:9587460
G Ikzf4 IKAROS family zinc finger 4 JBrowse link 7 3,061,422 3,098,142 RGD:11554173
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:8655875
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:6909137
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:8663449
RGD:8663450
G Il2ra interleukin 2 receptor subunit alpha JBrowse link 17 70,500,672 70,547,929 RGD:11554173
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:9587460
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:9587460
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:9587460
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:9587460
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:9587460
G Notch4 notch receptor 4 JBrowse link 20 4,329,794 4,353,868 RGD:6480681
G Prdx5 peroxiredoxin 5 JBrowse link 1 222,164,462 222,167,447 RGD:11554173
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 JBrowse link 2 206,342,066 206,390,348 RGD:6484734
G RT1-Ba RT1 class II, locus Ba JBrowse link 20 4,066,133 4,070,726 RGD:8547568
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:8547568
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:11554173
G Trps1 transcriptional repressor GATA binding 1 JBrowse link 7 90,085,895 90,320,430 RGD:8554872
bullous pemphigoid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl26 C-C motif chemokine ligand 26 JBrowse link 12 24,157,182 24,161,870 RGD:11087555
G Cfb complement factor B JBrowse link 20 4,536,206 4,542,073 RGD:7421522
G Col17a1 collagen type XVII alpha 1 chain JBrowse link 1 267,416,681 267,465,049 RGD:13592920
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:5147756
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:8547591
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:8663461
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:8547843
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:7421578
dermatitis herpetiformis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eln elastin JBrowse link 12 24,978,478 25,021,864 RGD:9585750
G Lta lymphotoxin alpha JBrowse link 20 4,851,889 4,854,677 RGD:8548777
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:8548777
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:7421578
hereditary spastic paraplegia 23 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dstyk dual serine/threonine and tyrosine protein kinase JBrowse link 13 49,195,325 49,243,327 RGD:7240710
vitiligo term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bach2 BTB domain and CNC homolog 2 JBrowse link 5 47,458,891 47,807,176 RGD:11554173
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:7401277
G C4a complement C4A JBrowse link 20 2,651,599 2,678,183 RGD:5688264
G Casp7 caspase 7 JBrowse link 1 277,190,557 277,242,779 RGD:11554173
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:9479149
RGD:9479169
RGD:9479150
G Ccr6 C-C motif chemokine receptor 6 JBrowse link 1 53,063,380 53,087,519 RGD:11554173
G Cd44 CD44 molecule (Indian blood group) JBrowse link 3 92,695,083 92,783,820 RGD:11554173
G Cd80 Cd80 molecule JBrowse link 11 64,815,201 64,855,293 RGD:11554173
G Clnk cytokine-dependent hematopoietic cell linker JBrowse link 14 76,657,165 76,834,050 RGD:11554173
G Clu clusterin JBrowse link 15 42,626,612 42,665,858 RGD:8699503
G Comt catechol-O-methyltransferase JBrowse link 11 86,715,981 86,735,630 RGD:8662333
RGD:8662336
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 JBrowse link 9 67,699,397 67,706,068 RGD:7411687
RGD:7411699
RGD:7411697
RGD:7411696
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:8552976
G Foxd3 forkhead box D3 JBrowse link 5 118,346,283 118,349,120 RGD:8554872
RGD:11554173
RGD:7240710
G Foxp1 forkhead box P1 JBrowse link 4 131,362,178 131,963,466 RGD:11554173
G Hgf hepatocyte growth factor JBrowse link 4 15,435,460 15,505,377 RGD:8548598
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:8662840
G Ifih1 interferon induced with helicase C domain 1 JBrowse link 3 48,557,696 48,604,097 RGD:11554173
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:8157616
G Ikzf4 IKAROS family zinc finger 4 JBrowse link 7 3,061,422 3,098,142 RGD:11554173
G Il13 interleukin 13 JBrowse link 10 38,982,909 38,985,466 RGD:8549591
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:8663475
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:7794736
RGD:11554173
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:8663475
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:8663475
G Kif1b kinesin family member 1B JBrowse link 5 165,994,803 166,133,497 RGD:8554872
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:8693723
RGD:8693724
G Mc1r melanocortin 1 receptor JBrowse link 19 56,215,420 56,219,987 RGD:11554173
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:11554173
G Nlrp1a NLR family, pyrin domain containing 1A JBrowse link 10 57,692,474 57,747,608 RGD:8554872
RGD:11554173
RGD:7240710
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:11554173
G Psmb9 proteasome 20S subunit beta 9 JBrowse link 20 3,973,424 3,978,845 RGD:1578358
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 JBrowse link 2 206,342,066 206,390,348 RGD:6484552
RGD:7829737
G RT1-Ba RT1 class II, locus Ba JBrowse link 20 4,066,133 4,070,726 RGD:8547566
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:5147644
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147644
G Sh2b3 SH2B adaptor protein 3 JBrowse link 12 40,261,990 40,265,757 RGD:11554173
G Sla src-like adaptor JBrowse link 7 107,585,055 107,604,950 RGD:11554173
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:8547522
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:8663475
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:7777152
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:7777152
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:7794736
RGD:11554173
G Tob2 transducer of ERBB2, 2 JBrowse link 7 123,079,520 123,088,240 RGD:11554173
G Tyr tyrosinase JBrowse link 1 151,012,598 151,106,802 RGD:8694387
RGD:8694409
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:8158061
RGD:8158066
Vogt-Koyanagi-Harada disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:8142356
G Itgb2 integrin subunit beta 2 JBrowse link 20 11,777,773 11,815,647 RGD:6482200
G RT1-Ba RT1 class II, locus Ba JBrowse link 20 4,066,133 4,070,726 RGD:8547565
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:7421525
RGD:7421581
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147653
RGD:7365099
RGD:7365067
RGD:5147857
G Stat4 signal transducer and activator of transcription 4 JBrowse link 9 54,340,649 54,457,753 RGD:8661713
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:8142356

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15609
    disease of anatomical entity 14966
      immune system disease 2645
        Autoimmune Diseases 1473
          autoimmune disease of skin and connective tissue 79
            Vogt-Koyanagi-Harada disease 7
            alopecia areata + 27
            bullous pemphigoid 8
            dermatitis herpetiformis + 4
            pemphigus gestationis 0
            vitiligo + 47
Path 2
Term Annotations click to browse term
  disease 15609
    disease of anatomical entity 14966
      Immune & Inflammatory Diseases 3227
        immune system disease 2645
          hypersensitivity reaction disease 1498
            autoimmune hypersensitivity disease 1202
              autoimmune disease of musculoskeletal system 868
                rheumatic disease 855
                  autoimmune disease of skin and connective tissue 79
                    Vogt-Koyanagi-Harada disease 7
                    alopecia areata + 27
                    bullous pemphigoid 8
                    dermatitis herpetiformis + 4
                    pemphigus gestationis 0
                    vitiligo + 47
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.