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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:retinitis pigmentosa 2
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Accession:DOID:0110415 term browser browse the term
Definition:A retinitis pigmentosa that has_material_basis_in mutation in the RP2 gene on chromosome Xp11.3. (DO)
Synonyms:exact_synonym: RP2
 primary_id: MESH:C567523
 alt_id: OMIM:312600;   RDO:0015582
For additional species annotation, visit the Alliance of Genome Resources.


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retinitis pigmentosa 2 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ADP ribosylation factor like GTPase 3 ISS OMIM:312600 MouseDO NCBI chr 1:266,287,015...266,333,099
Ensembl chr 1:266,287,017...266,333,105
JBrowse link
G Rp2 RP2 activator of ARL3 GTPase ISO ClinVar Annotator: match by OMIM:312600
ClinVar Annotator: match by term: Retinitis pigmentosa 2
OMIM
ClinVar
PMID:9697692, PMID:10053026, PMID:10090907, PMID:10520237, PMID:10862093, PMID:10937588, PMID:10942419, PMID:11262649, PMID:11462235, PMID:11992260, PMID:12657579, PMID:15032968, PMID:16472755, PMID:18376416, PMID:20021257, PMID:21738648, PMID:22072390, PMID:22334370, PMID:24033266, PMID:25097241, PMID:25741868, PMID:28041643, PMID:28209709, PMID:28492532, PMID:30576320, PMID:30718709 NCBI chr  X:2,066,298...2,116,661
Ensembl chr  X:2,064,486...2,116,656
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16058
    sensory system disease 5213
      eye disease 2652
        fundus dystrophy 333
          retinitis pigmentosa 266
            retinitis pigmentosa 2 2
Path 2
Term Annotations click to browse term
  disease 16058
    disease of anatomical entity 15305
      nervous system disease 10879
        sensory system disease 5213
          eye disease 2652
            retinal disease 780
              retinal degeneration 466
                fundus dystrophy 333
                  retinitis pigmentosa 266
                    retinitis pigmentosa 2 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.