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ONTOLOGY REPORT - ANNOTATIONS


Term:colon carcinoma
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Accession:DOID:1520 term browser browse the term
Definition:A colon cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells. (DO)
Synonyms:exact_synonym: carcinoma of colon;   colonic carcinoma
 primary_id: RDO:9002019
 xref: NCI:C4910
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colon carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt1 AKT serine/threonine kinase 1 JBrowse link NW_004955538 3,208,711 3,224,386 RGD:9068941
G Apc APC regulator of WNT signaling pathway JBrowse link NW_004955418 2,567,804 2,675,062 RGD:9068941
G Axin2 axin 2 JBrowse link NW_004955478 4,952,551 4,982,223 RGD:9068941
G Bard1 BRCA1 associated RING domain 1 JBrowse link NW_004955457 1,187,942 1,258,475 RGD:9068941
G Bax BCL2 associated X, apoptosis regulator JBrowse link NW_004955559 1,695,960 1,700,246 RGD:9068941
G Bcl10 BCL10 immune signaling adaptor JBrowse link NW_004955423 8,710,231 8,720,530 RGD:9068941
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link NW_004955494 2,567,238 2,712,708 RGD:9068941
G Brca2 BRCA2 DNA repair associated JBrowse link NW_004955431 13,449,287 13,526,878 RGD:9068941
G Brip1 BRCA1 interacting protein C-terminal helicase 1 JBrowse link NW_004955451 2,705,834 2,820,610 RGD:9068941
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase JBrowse link NW_004955470 3,152,798 3,190,185 RGD:9068941
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B JBrowse link NW_004955416 7,105,302 7,159,121 RGD:9068941
G Crkl CRK like proto-oncogene, adaptor protein JBrowse link NW_004955442 19,358,202 19,388,552 RGD:9068941
G Ctnnb1 catenin beta 1 JBrowse link NW_004955420 29,030,716 29,047,447 RGD:9068941
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link NW_004955433 748,392 750,890 RGD:9068941
G Dcc DCC netrin 1 receptor JBrowse link NW_004955402 37,123,112 38,218,876 RGD:9068941
G Dlc1 DLC1 Rho GTPase activating protein JBrowse link NW_004955463 3,599,415 3,981,187 RGD:9068941
G Ep300 E1A binding protein p300 JBrowse link NW_004955413 26,647,553 26,727,875 RGD:9068941
G Fancc FA complementation group C JBrowse link NW_004955422 22,031,825 22,246,478 RGD:9068941
G Fance FA complementation group E JBrowse link NW_004955437 3,369,127 3,382,072 RGD:9068941
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link NW_004955514 1,030,244 1,038,590 RGD:9068941
G Flcn folliculin JBrowse link NW_004955577 672,774 694,140 RGD:9068941
G Flt1 fms related receptor tyrosine kinase 1 JBrowse link NW_004955497 7,653,309 7,831,737 RGD:9068941
G Flt3lg fms related receptor tyrosine kinase 3 ligand JBrowse link NW_004955559 1,364,056 1,371,245 RGD:9068941
G Flt4 fms related receptor tyrosine kinase 4 JBrowse link NW_004955408 98,995 137,922 RGD:9068941
G Hpgd 15-hydroxyprostaglandin dehydrogenase JBrowse link NW_004955403 32,569,841 32,614,860 RGD:9068941
G Igf2r insulin like growth factor 2 receptor JBrowse link NW_004955439 20,754,915 20,874,759 RGD:9068941
G Kdr kinase insert domain receptor JBrowse link NW_004955447 15,810,816 15,851,702 RGD:9068941
G Mcc MCC regulator of WNT signaling pathway JBrowse link NW_004955408 32,928,519 33,265,049 RGD:9068941
G Mlh1 mutL homolog 1 JBrowse link NW_004955421 3,890,291 3,936,892 RGD:9068941
G Mlh3 mutL homolog 3 JBrowse link NW_004955523 515,409 547,257 RGD:9068941
G Msh2 mutS homolog 2 JBrowse link NW_004955441 14,188,315 14,247,608 RGD:9068941
G Mutyh mutY DNA glycosylase JBrowse link NW_004955464 12,927,669 12,936,894 RGD:9068941
G Nras NRAS proto-oncogene, GTPase JBrowse link NW_004955435 18,001,517 18,009,105 RGD:9068941
G Palb2 partner and localizer of BRCA2 JBrowse link NW_004955493 2,149,053 2,175,482 RGD:9068941
G Pdgfrl platelet derived growth factor receptor like JBrowse link NW_004955552 2,041,267 2,077,971 RGD:9068941
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link NW_004955420 8,355,415 8,427,024 RGD:9068941
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link NW_004955559 712,375 730,551 RGD:9068941
G Pparg peroxisome proliferator activated receptor gamma JBrowse link NW_004955429 14,814,690 14,936,869 RGD:9068941
G Prf1 perforin 1 JBrowse link NW_004955437 20,700,912 20,705,076 RGD:9068941
G Ptpn12 protein tyrosine phosphatase non-receptor type 12 JBrowse link NW_004955410 7,556,283 7,599,170 RGD:9068941
G Ptprj protein tyrosine phosphatase receptor type J JBrowse link NW_004955422 396,266 438,792 RGD:9068941
G Rad54b RAD54 homolog B JBrowse link NW_004955417 10,598,295 10,685,999 RGD:9068941
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit JBrowse link NW_004955411 36,068,248 36,246,607 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004955555 274,405 288,441 RGD:9068941
G Tgfb2 transforming growth factor beta 2 JBrowse link NW_004955406 174,949 249,248 RGD:9068941
G Tlr3 toll like receptor 3 JBrowse link NW_004955403 22,977,882 23,001,392 RGD:9068941
G Tnfrsf17 TNF receptor superfamily member 17 JBrowse link NW_004955442 6,626,434 6,651,193 RGD:9068941
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link NW_004955413 3,982,670 3,996,320 RGD:9068941
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link NW_004955486 1,790,531 1,817,986 RGD:9068941
G Tp53 tumor protein p53 JBrowse link NW_004955467 9,241,391 9,256,716 RGD:9068941
G Tyms thymidylate synthetase JBrowse link NW_004955402 9,295,862 9,304,952 RGD:9068941
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link NW_004955524 3,007,074 3,009,886 RGD:9068941
G Vegfa vascular endothelial growth factor A JBrowse link NW_004955437 9,527,445 9,541,908 RGD:9068941
colon adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa7 annexin A7 JBrowse link NW_004955437 18,394,371 18,421,779 RGD:9068941
G Apc APC regulator of WNT signaling pathway JBrowse link NW_004955418 2,567,804 2,675,062 RGD:9068941
G Bax BCL2 associated X, apoptosis regulator JBrowse link NW_004955559 1,695,960 1,700,246 RGD:9068941
G Csf2 colony stimulating factor 2 JBrowse link NW_004955408 3,452,009 3,454,255 RGD:9068941
G Ctnnb1 catenin beta 1 JBrowse link NW_004955420 29,030,716 29,047,447 RGD:9068941
G Daxx death domain associated protein JBrowse link NW_004955437 1,869,692 1,874,041 RGD:9068941
G Fech ferrochelatase JBrowse link NW_004955402 41,902,868 41,938,099 RGD:9068941
G Hmgb1 high mobility group box 1 JBrowse link NW_004955431 15,373,207 15,377,339 RGD:9068941
G Mapk1 mitogen-activated protein kinase 1 JBrowse link NW_004955442 17,284,232 17,380,026 RGD:9068941
G Mapk3 mitogen-activated protein kinase 3 JBrowse link NW_004955493 6,870,699 6,876,836 RGD:9068941
G Mgmt O-6-methylguanine-DNA methyltransferase JBrowse link NW_004955477 7,103,035 7,375,073 RGD:9068941
G Msh6 mutS homolog 6 JBrowse link NW_004955441 14,451,207 14,471,316 RGD:9068941
G Pcsk5 proprotein convertase subtilisin/kexin type 5 JBrowse link NW_004955512 2,914,834 3,333,440 RGD:9068941
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link NW_004955420 8,355,415 8,427,024 RGD:9068941
G Rac1 Rac family small GTPase 1 JBrowse link NW_004955460 13,270,159 13,295,562 RGD:9068941
G Rad54l RAD54 like JBrowse link NW_004955464 11,996,512 12,033,525 RGD:9068941
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link NW_004955452 8,143,850 8,174,830 RGD:9068941
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link NW_004955466 612,221 617,087 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004955445 13,663,474 13,669,102 RGD:9068941
G Tert telomerase reverse transcriptase JBrowse link NW_004955504 649,248 669,796 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004955555 274,405 288,441 RGD:9068941
G Vegfc vascular endothelial growth factor C JBrowse link NW_004955403 31,016,423 31,130,892 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 11744
    disease of cellular proliferation 5113
      cancer 3754
        cell type cancer 2785
          carcinoma 1831
            colon carcinoma 70
              adenosquamous colon carcinoma 0
              colon adenocarcinoma + 22
              colon carcinoma in situ 0
              colon small cell carcinoma 0
              colon squamous cell carcinoma 0
              medullary colon carcinoma 0
Path 2
Term Annotations click to browse term
  disease 11744
    disease of cellular proliferation 5113
      Neoplasms by Site 4566
        Digestive System Neoplasms 1687
          Gastrointestinal Neoplasms 1563
            Intestinal Neoplasms 602
              intestinal cancer 214
                large intestine cancer 210
                  colorectal cancer 210
                    colon cancer 115
                      colon carcinoma 70
                        adenosquamous colon carcinoma 0
                        colon adenocarcinoma + 22
                        colon carcinoma in situ 0
                        colon small cell carcinoma 0
                        colon squamous cell carcinoma 0
                        medullary colon carcinoma 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.