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ONTOLOGY REPORT - ANNOTATIONS


Term:head and neck carcinoma
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Accession:DOID:1542 term browser browse the term
Definition:A head and neck cancer that has_material_basis_in epithelial cells and is located in the upper aerodigestive tract, including the lip, oral cavity (mouth), nasal cavity, paranasal sinuses, pharynx, and larynx. (DO)
Synonyms:exact_synonym: carcinoma of neck;   carcinoma of the neck
 primary_id: RDO:9003527
 xref: NCI:C6077
For additional species annotation, visit the Alliance of Genome Resources.


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head and neck squamous cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:11554173
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:11554173
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:11554173
G Abcg2 ATP binding cassette subfamily G member 2 JBrowse link 4 88,765,441 88,890,268 RGD:11554173
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
RGD:11554173
G Ankrd17 ankyrin repeat domain 17 JBrowse link 14 19,291,025 19,431,521 RGD:8554872
G Atp7b ATPase copper transporting beta JBrowse link 16 74,865,516 74,944,935 RGD:11554173
G B2m beta-2 microglobulin JBrowse link 3 114,087,287 114,093,311 RGD:8554872
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:8554872
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:11554173
G Ccdc3 coiled-coil domain containing 3 JBrowse link 17 76,991,722 77,093,515 RGD:8554872
G Ccna1 cyclin A1 JBrowse link 2 144,456,689 144,503,570 RGD:11554173
G Ccna2 cyclin A2 JBrowse link 2 123,274,727 123,282,266 RGD:11554173
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:11554173
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:13434911
RGD:11554173
G Ccne1 cyclin E1 JBrowse link 1 94,485,830 94,495,112 RGD:11554173
G Ccne2 cyclin E2 JBrowse link 5 24,434,077 24,446,406 RGD:11554173
G Cdk2 cyclin dependent kinase 2 JBrowse link 7 3,124,953 3,132,533 RGD:11554173
G Cdk4 cyclin-dependent kinase 4 JBrowse link 7 70,345,971 70,352,689 RGD:11554173
G Cdk6 cyclin-dependent kinase 6 JBrowse link 4 27,781,728 27,969,653 RGD:11554173
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:8552291
RGD:8554872
RGD:11554173
G Cntn4 contactin 4 JBrowse link 4 137,785,166 138,787,527 RGD:8554872
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:8554872
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:8554872
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:9589078
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:8554872
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:8554872
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:8554872
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:8554872
G Fancb FA complementation group B JBrowse link X 31,124,018 31,140,790 RGD:11344903
G Fancd2 FA complementation group D2 JBrowse link 4 145,489,869 145,551,479 RGD:11344907
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:8554872
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:8554872
G Fhit fragile histidine triad diadenosine triphosphatase JBrowse link 15 15,697,292 16,862,873 RGD:8554872
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:8554872
G Grik2 glutamate ionotropic receptor kainate type subunit 2 JBrowse link 20 53,791,428 54,517,691 RGD:8554872
G Hoxa5 homeo box A5 RGD:11554173
G Hoxd10 homeo box D10 JBrowse link 3 61,614,133 61,617,342 RGD:11554173
G Hoxd11 homeobox D11 JBrowse link 3 61,604,256 61,606,874 RGD:11554173
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:8554872
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:8554872
G Ifnl3 interferon, lambda 3 JBrowse link 1 85,236,243 85,237,775 RGD:11554173
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:11554173
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:11554173
G Il1rap interleukin 1 receptor accessory protein JBrowse link 11 77,456,648 77,593,208 RGD:11554173
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:8662923
RGD:8662971
G Ing1 inhibitor of growth family, member 1 JBrowse link 16 83,277,055 83,278,120 RGD:7240710
RGD:8554872
G Irs1 insulin receptor substrate 1 JBrowse link 9 88,033,668 88,086,488 RGD:11554173
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:8554872
G Kiss1 KiSS-1 metastasis-suppressor JBrowse link 13 50,529,506 50,537,603 RGD:11554173
G Lnx1 ligand of numb-protein X 1 JBrowse link 14 36,047,136 36,149,740 RGD:8554872
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:8554872
G Lrrc56 leucine rich repeat containing 56 JBrowse link 1 214,182,232 214,197,184 RGD:8554872
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:8554872
G Map2k2 mitogen activated protein kinase kinase 2 JBrowse link 7 11,458,971 11,478,520 RGD:8554872
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:8554872
G Mgmt O-6-methylguanine-DNA methyltransferase JBrowse link 1 209,237,255 209,464,189 RGD:11554173
G Mir155 microRNA 155 JBrowse link 11 24,176,603 24,176,667 RGD:21081517
G Mir222 microRNA 222 JBrowse link X 3,683,919 3,684,021 RGD:11554173
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:8554872
G Nampt nicotinamide phosphoribosyltransferase JBrowse link 6 52,122,085 52,156,473 RGD:11554173
G Ndrg1 N-myc downstream regulated 1 JBrowse link 7 107,734,326 107,775,701 RGD:11554173
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:8554872
G Nsdhl NAD(P) dependent steroid dehydrogenase-like JBrowse link X 152,933,118 152,964,399 RGD:11554173
G Ogg1 8-oxoguanine DNA glycosylase JBrowse link 4 145,282,828 145,289,367 RGD:8657144
RGD:8657147
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
RGD:11554173
G Ppp2r1a protein phosphatase 2 scaffold subunit A alpha JBrowse link 1 60,717,386 60,736,629 RGD:8554872
G Prex2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 JBrowse link 5 7,622,668 7,941,715 RGD:8554872
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:8554872
RGD:11554173
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:11554173
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:8554872
G Rasgrp3 RAS guanyl releasing protein 3 JBrowse link 6 21,072,634 21,171,619 RGD:8554872
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:8554872
G Samd4a sterile alpha motif domain containing 4A JBrowse link 15 23,666,543 23,879,067 RGD:8554872
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:8547730
G Slc29a1 solute carrier family 29 member 1 JBrowse link 9 17,784,468 17,799,008 RGD:8554872
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:8554872
RGD:12880035
G Sntb1 syntrophin, beta 1 JBrowse link 7 95,395,417 95,670,093 RGD:8554872
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:11554173
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:8694302
RGD:11554173
G Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b JBrowse link 15 51,433,853 51,464,215 RGD:11038717
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8554872
RGD:11554173
G U2af1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 20 10,396,652 10,407,564 RGD:8554872
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:11554173
G Wee1 WEE1 G2 checkpoint kinase JBrowse link 1 174,765,228 174,790,882 RGD:11554173
G Wrap53 WD repeat containing, antisense to TP53 JBrowse link 10 56,169,024 56,185,800 RGD:8554872
RGD:21081533
RGD:21081529
G Yap1 Yes1 associated transcriptional regulator JBrowse link 8 6,133,014 6,204,240 RGD:11554173
tongue squamous cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:8694469
G Brinp3 BMP/retinoic acid inducible neural specific 3 JBrowse link 13 63,526,486 63,959,390 RGD:14398487
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:8661771
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:8662376
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:8551769
G Fancb FA complementation group B JBrowse link X 31,124,018 31,140,790 RGD:11049143
G Fancc FA complementation group C JBrowse link 17 826,512 955,703 RGD:11049143
G Fancf FA complementation group F JBrowse link 1 107,229,516 107,232,321 RGD:11049143
G Fancg FA complementation group G JBrowse link 5 58,448,060 58,456,416 RGD:11049143
G Fanci FA complementation group I JBrowse link 1 141,116,565 141,172,997 RGD:11049143
G Fancl FA complementation group L JBrowse link 14 110,675,306 110,740,880 RGD:11049143
G Fancm FA complementation group M JBrowse link 6 86,823,195 86,877,067 RGD:11049143
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:8662380
G Hgf hepatocyte growth factor JBrowse link 4 15,435,460 15,505,377 RGD:8548612
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:8662972
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:8662972
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:8662972
G Jak3 Janus kinase 3 JBrowse link 16 20,107,471 20,120,678 RGD:11531126
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:8551769
G Met MET proto-oncogene, receptor tyrosine kinase JBrowse link 4 44,747,467 44,854,628 RGD:8548612
G Mtus1 microtubule associated scaffold protein 1 JBrowse link 16 54,240,892 54,386,131 RGD:25330347
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:8661665
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8547851

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Term Annotations click to browse term
  disease 15849
    disease of cellular proliferation 5878
      cancer 4210
        organ system cancer 4034
          head and neck cancer 112
            head and neck carcinoma 106
              head and neck squamous cell carcinoma + 106
              larynx carcinoma in situ 0
              oral cavity carcinoma in situ + 0
              pharynx carcinoma in situ 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.