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ONTOLOGY REPORT - ANNOTATIONS


Term:thyroid gland papillary carcinoma
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Accession:DOID:3969 term browser browse the term
Definition:A differentiated thyroid gland carcinoma that is characterized by the small mushroom shape of the tumor which has a stem attached to the epithelial layer abd arises from the follicular cells of the thyroid gland. (DO)
Synonyms:exact_synonym: FAMILIAL NONMEDULLARY THYROID CANCER, PAPILLARY;   NONMEDULLARY THYROID CARCINOMA, PAPILLARY;   Nonmedullary Thyroid Carcinoma;   PACT;   PTC;   Papillary Carcinoma Of Thyroid;   TPC;   familial nonmedullary thyroid cancer;   papillary carcinoma of the thyroid gland;   papillary thyroid cancer;   papillary thyroid carcinoma
 primary_id: MESH:C536915
 alt_id: DOID:9005529;   RDO:0002639;   RDO:9003805
 xref: GARD:12027;   NCI:C4035;   OMIM:PS188550
For additional species annotation, visit the Alliance of Genome Resources.


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thyroid gland papillary carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Braf Braf transforming gene JBrowse link 6 39,603,231 39,725,658 RGD:7241798
RGD:8554872
RGD:13592920
G Brd4 bromodomain containing 4 JBrowse link 17 32,196,272 32,284,743 RGD:11085509
G Cat catalase JBrowse link 2 103,453,904 103,485,153 RGD:9068926
G Cbx7 chromobox 7 JBrowse link 15 79,915,804 79,971,143 RGD:9587357
G Ccnd1 cyclin D1 JBrowse link 7 144,929,931 144,939,937 RGD:13792605
G Cdh1 cadherin 1 JBrowse link 8 106,603,350 106,670,247 RGD:13792554
RGD:8554872
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:13792558
RGD:13792605
G Lef1 lymphoid enhancer binding factor 1 JBrowse link 3 131,110,277 131,224,357 RGD:13792605
G Lig4 ligase IV, DNA, ATP-dependent JBrowse link 8 9,970,020 9,977,696 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:8554872
G Myc myelocytomatosis oncogene JBrowse link 15 61,985,341 61,990,361 RGD:13792605
G Nkx2-1 NK2 homeobox 1 JBrowse link 12 56,531,935 56,536,908 RGD:13592920
G Palb2 partner and localizer of BRCA2 JBrowse link 7 122,107,262 122,132,980 RGD:8554872
G Pcm1 pericentriolar material 1 JBrowse link 8 41,239,484 41,334,088 RGD:8554872
G Plau plasminogen activator, urokinase JBrowse link 14 20,836,662 20,843,388 RGD:7241798
G Rap1gap Rap1 GTPase-activating protein JBrowse link 4 137,664,711 137,729,861 RGD:9835342
G Runx1 runt related transcription factor 1 JBrowse link 16 92,601,466 92,826,074 RGD:8554872
G Runx3 runt related transcription factor 3 JBrowse link 4 135,120,645 135,177,990 RGD:13792554
G Rxrg retinoid X receptor gamma JBrowse link 1 167,598,362 167,639,623 RGD:13792605
G Tpm3 tropomyosin 3, gamma JBrowse link 3 90,072,651 90,100,902 RGD:13792605
G Wdr3 WD repeat domain 3 JBrowse link 3 100,138,180 100,162,407 RGD:11041898
Thyroid Cancer, Nonmedullary, 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxe1 forkhead box E1 JBrowse link 4 46,343,644 46,345,774 RGD:8554872
RGD:7240710
Thyroid Cancer, Nonmedullary, 5 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Habp2 hyaluronic acid binding protein 2 JBrowse link 19 56,287,109 56,320,820 RGD:7240710
RGD:8554872
Thyroid Carcinoma, Nonmedullary 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gm4756 predicted gene 4756 JBrowse link 12 72,620,119 72,629,021 RGD:8554872
G Nkx2-1 NK2 homeobox 1 JBrowse link 12 56,531,935 56,536,908 RGD:7240710
RGD:8554872
G Pcm1 pericentriolar material 1 JBrowse link 8 41,239,484 41,334,088 RGD:8554872

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 12617
    disease of cellular proliferation 5640
      cancer 4076
        cell type cancer 3034
          carcinoma 1880
            adenocarcinoma 1293
              thyroid gland adenocarcinoma 35
                differentiated thyroid gland carcinoma 35
                  thyroid gland papillary carcinoma 24
                    Papillary Thyroid Carcinoma, with Papillary Renal Neoplasia 0
                    Papillary Thyroid Microcarcinoma 0
                    Thyroid Cancer, Nonmedullary, 4 1
                    Thyroid Cancer, Nonmedullary, 5 1
                    Thyroid Carcinoma, Nonmedullary 1 3
                    columnar cell variant papillary carcinoma 0
                    multicentric papillary thyroid carcinoma 0
                    nonencapsulated sclerosing carcinoma 0
                    papillary follicular thyroid adenocarcinoma 0
                    tall cell variant papillary carcinoma 0
Path 2
Term Annotations click to browse term
  disease 12617
    disease of cellular proliferation 5640
      cancer 4076
        organ system cancer 3788
          endocrine gland cancer 1507
            thyroid gland cancer 47
              thyroid gland carcinoma 42
                thyroid gland adenocarcinoma 35
                  differentiated thyroid gland carcinoma 35
                    thyroid gland papillary carcinoma 24
                      Papillary Thyroid Carcinoma, with Papillary Renal Neoplasia 0
                      Papillary Thyroid Microcarcinoma 0
                      Thyroid Cancer, Nonmedullary, 4 1
                      Thyroid Cancer, Nonmedullary, 5 1
                      Thyroid Carcinoma, Nonmedullary 1 3
                      columnar cell variant papillary carcinoma 0
                      multicentric papillary thyroid carcinoma 0
                      nonencapsulated sclerosing carcinoma 0
                      papillary follicular thyroid adenocarcinoma 0
                      tall cell variant papillary carcinoma 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.