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ONTOLOGY REPORT - ANNOTATIONS


Term:stomach carcinoma
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Accession:DOID:5517 term browser browse the term
Definition:A stomach cancer that is located_in the stomach. (DO)
Synonyms:exact_synonym: carcinoma of stomach;   gastric carcinoma
 primary_id: RDO:9001928
 xref: NCI:C4911
For additional species annotation, visit the Alliance of Genome Resources.


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stomach carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp6v1c1 ATPase H+ transporting V1 subunit C1 JBrowse link 7 77,678,853 77,716,658 RGD:14700649
G Bcl2l10 BCL2 like 10 JBrowse link 8 82,288,705 82,294,750 RGD:14392807
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:2293138
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:9587355
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:8662389
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:9587437
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:9588260
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:9588529
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4
82,506
6,083,650
109,986
6,294,413
RGD:9588234
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:1600468
G Letmd1 LETM1 domain containing 1 JBrowse link 7 142,106,364 142,119,900 RGD:2314918
G Mdc1 mediator of DNA damage checkpoint 1 JBrowse link 20 3,405,017 3,419,831 RGD:9589059
G Mmp1 matrix metallopeptidase 1 JBrowse link 8 5,703,206 5,723,593 RGD:7206857
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:2325777
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:2325777
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:2317738
G Mutyh mutY DNA glycosylase JBrowse link 5 135,663,328 135,675,348 RGD:1600201
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:5683907
G Sparc secreted protein acidic and cysteine rich JBrowse link 10 40,742,390 40,764,232 RGD:2300058
G Spint1 serine peptidase inhibitor, Kunitz type 1 JBrowse link 3 111,049,132 111,061,991 RGD:1581312
gastric adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr1 activin A receptor type 1 JBrowse link 3 44,432,476 44,539,680 RGD:8554872
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
G Amigo2 adhesion molecule with Ig like domain 2 JBrowse link 7 138,704,124 138,707,221 RGD:13838842
G B2m beta-2 microglobulin JBrowse link 3 114,087,287 114,093,311 RGD:8554872
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:8554872
G Cd44 CD44 molecule (Indian blood group) JBrowse link 3 92,695,083 92,783,820 RGD:2289356
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:8554872
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:8554872
G Cnot9 CCR4-NOT transcription complex subunit 9 JBrowse link 9 81,783,349 81,808,815 RGD:8554872
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:8554872
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:8554872
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:8554872
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 7 2,989,202 3,010,610 RGD:8554872
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:8554872
G Fgfr1 Fibroblast growth factor receptor 1 JBrowse link 16 71,265,390 71,319,046 RGD:8554872
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 1 200,590,951 200,696,946 RGD:8554872
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:8554872
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 RGD:9854641
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:8554872
G Irf1 interferon regulatory factor 1 JBrowse link 10 39,109,530 39,116,532 RGD:1600013
G Kit KIT proto-oncogene receptor tyrosine kinase JBrowse link 14 35,072,131 35,149,638 RGD:8554872
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:8554872
G Lrrc56 leucine rich repeat containing 56 JBrowse link 1 214,182,232 214,197,184 RGD:8554872
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:8554872
G Map2k2 mitogen activated protein kinase kinase 2 JBrowse link 7 11,458,971 11,478,520 RGD:8554872
G Med12 mediator complex subunit 12 JBrowse link X 71,174,653 71,197,812 RGD:8554872
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:8554872
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:8554872
G Nras NRAS proto-oncogene, GTPase JBrowse link 2 205,553,119 205,563,716 RGD:8554872
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Pmepa1 prostate transmembrane protein, androgen induced 1 JBrowse link 3 171,295,630 171,342,662 RGD:2315108
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:8554872
G Ppp2r1a protein phosphatase 2 scaffold subunit A alpha JBrowse link 1 60,717,386 60,736,629 RGD:8554872
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:8554872
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 JBrowse link 12 40,895,515 40,955,999 RGD:8554872
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase JBrowse link 4 147,532,040 147,592,769 RGD:8554872
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:8554872
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:8554872
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8554872
RGD:14995496
gastric body carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:9589084
gastric cardia adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:11035298
linitis plastica term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Psca prostate stem cell antigen JBrowse link 7 116,090,189 116,091,955 RGD:11554173

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15609
    disease of cellular proliferation 5822
      Neoplasms by Histologic Type 3638
        cell type cancer 3054
          carcinoma 1913
            stomach carcinoma 61
              gastric adenocarcinoma + 41
              gastric body carcinoma 1
              gastric cardia carcinoma + 1
              gastric fundus carcinoma 0
              gastric pylorus carcinoma 0
              gastric small cell carcinoma 0
              gastric squamous cell carcinoma + 0
              stomach carcinoma in situ 0
Path 2
Term Annotations click to browse term
  disease 15609
    disease of anatomical entity 14966
      gastrointestinal system disease 4495
        Gastrointestinal Diseases 2444
          stomach disease 509
            Stomach Neoplasms 370
              stomach cancer 104
                stomach carcinoma 61
                  gastric adenocarcinoma + 41
                  gastric body carcinoma 1
                  gastric cardia carcinoma + 1
                  gastric fundus carcinoma 0
                  gastric pylorus carcinoma 0
                  gastric small cell carcinoma 0
                  gastric squamous cell carcinoma + 0
                  stomach carcinoma in situ 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.