Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:head and neck squamous cell carcinoma
go back to main search page
Accession:DOID:5520 term browser browse the term
Definition:A head and neck carcinoma that has_material_basis_in squamous cells that line the moist, mucosal surfaces inside the head and neck. (DO)
Synonyms:exact_synonym: HNSCC;   SQUAMOUS CELL CARCINOMA, HEAD AND NECK, SOMATIC;   Squamous cell carcinoma of the head and neck;   carcinoma of the head and neck;   squamous cell carcinomas of head and neck
 narrow_synonym: LIP AND ORAL CAVITY CARCINOMA
 primary_id: MESH:C535575
 alt_id: OMIM:275355;   RDO:0000778
 xref: GARD:8503;   NCI:C34447
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants       view all columns           Sort by:
 
head and neck squamous cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKT1 AKT serine/threonine kinase 1 JBrowse link 14 104,769,349 104,795,748 RGD:8554872
G ANKRD17 ankyrin repeat domain 17 JBrowse link 4 73,073,376 73,259,766 RGD:8554872
G B2M beta-2-microglobulin JBrowse link 15 44,711,492 44,718,877 RGD:8554872
G BRAF B-Raf proto-oncogene, serine/threonine kinase JBrowse link 7 140,719,331 140,924,929 RGD:8554872
G CCDC3 coiled-coil domain containing 3 JBrowse link 10 12,896,625 13,099,989 RGD:8554872
G CCND1 cyclin D1 JBrowse link 11 69,641,156 69,654,474 RGD:13434911
G CDKN2A cyclin dependent kinase inhibitor 2A JBrowse link 9 21,967,752 21,995,324 RGD:8552291
RGD:8554872
G CNTN4 contactin 4 JBrowse link 3 2,098,803 3,059,080 RGD:8554872
G CREBBP CREB binding protein JBrowse link 16 3,725,054 3,880,727 RGD:8554872
G CTNNB1 catenin beta 1 JBrowse link 3 41,199,422 41,240,445 RGD:8554872
G DNMT3B DNA methyltransferase 3 beta JBrowse link 20 32,762,385 32,809,356 RGD:9589078
G EGFR epidermal growth factor receptor JBrowse link 7 55,019,017 55,211,628 RGD:8554872
G EGFR-AS1 EGFR antisense RNA 1 JBrowse link 7 55,179,750 55,188,949 RGD:8554872
G EP300 E1A binding protein p300 JBrowse link 22 41,092,592 41,180,077 RGD:8554872
G ERBB2 erb-b2 receptor tyrosine kinase 2 JBrowse link 17 39,688,084 39,728,662 RGD:8554872
G FANCB FA complementation group B JBrowse link X 14,690,863 14,873,255 RGD:11344903
G FANCD2 FA complementation group D2 JBrowse link 3 10,026,437 10,101,932 RGD:11344907
G FBXW7 F-box and WD repeat domain containing 7 JBrowse link 4 152,320,544 152,536,873 RGD:8554872
G FGFR3 fibroblast growth factor receptor 3 JBrowse link 4 1,793,293 1,808,872 RGD:8554872
G FHIT fragile histidine triad diadenosine triphosphatase JBrowse link 3 59,747,277 61,251,461 RGD:8554872
G GNAS GNAS complex locus JBrowse link 20 58,839,681 58,911,196 RGD:8554872
G GRIK2 glutamate ionotropic receptor kainate type subunit 2 JBrowse link 6 101,393,708 102,070,083 RGD:8554872
G H3C11 H3 clustered histone 11 JBrowse link 6 27,871,845 27,872,346 RGD:8554872
G HRAS HRas proto-oncogene, GTPase JBrowse link 11 532,242 535,576 RGD:8554872
G IDH2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 15 90,083,045 90,102,468 RGD:8554872
G IL2 interleukin 2 JBrowse link 4 122,449,479 122,456,725 RGD:8662923
RGD:8662971
G ING1 inhibitor of growth family member 1 JBrowse link 13 110,712,623 110,723,339 RGD:8554872
RGD:7240710
G LNX1 ligand of numb-protein X 1 JBrowse link 4 53,458,264 53,652,525 RGD:8554872
G LRRC56 leucine rich repeat containing 56 JBrowse link 11 518,967 554,916 RGD:8554872
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 15 66,386,912 66,491,544 RGD:8554872
G MAP2K2 mitogen-activated protein kinase kinase 2 JBrowse link 19 4,090,321 4,124,184 RGD:8554872
G MAPK1 mitogen-activated protein kinase 1 JBrowse link 22 21,759,657 21,867,680 RGD:8554872
G MMP2 matrix metallopeptidase 2 JBrowse link 16 55,478,830 55,506,691 RGD:8554872
G NFE2L2 nuclear factor, erythroid 2 like 2 JBrowse link 2 177,230,303 177,265,131 RGD:8554872
G OGG1 8-oxoguanine DNA glycosylase JBrowse link 3 9,749,944 9,788,246 RGD:8657144
RGD:8657147
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link 3 179,148,114 179,240,093 RGD:8554872
G PPP2R1A protein phosphatase 2 scaffold subunit Aalpha JBrowse link 19 52,190,052 52,229,518 RGD:8554872
G PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 JBrowse link 8 67,951,918 68,237,032 RGD:8554872
G PTEN phosphatase and tensin homolog JBrowse link 10 87,863,625 87,971,930 RGD:8554872
G RAC1 Rac family small GTPase 1 JBrowse link 7 6,374,527 6,403,967 RGD:8554872
G RASGRP3 RAS guanyl releasing protein 3 JBrowse link 2 33,436,348 33,564,731 RGD:8554872
G RHOA ras homolog family member A JBrowse link 3 49,359,145 49,411,976 RGD:8554872
G SAMD4A sterile alpha motif domain containing 4A JBrowse link 14 54,567,097 54,793,315 RGD:8554872
G SERPINE1 serpin family E member 1 JBrowse link 7 101,127,104 101,139,247 RGD:8547730
G SMAD4 SMAD family member 4 JBrowse link 18 51,030,213 51,085,042 RGD:12880035
RGD:8554872
G SNTB1 syntrophin beta 1 JBrowse link 8 120,535,756 120,812,046 RGD:8554872
G STAT3 signal transducer and activator of transcription 3 JBrowse link 17 42,313,324 42,388,502 RGD:8694302
G TNFRSF10A TNF receptor superfamily member 10a JBrowse link 8 23,190,452 23,225,102 RGD:11038717
G TNFRSF10B TNF receptor superfamily member 10b JBrowse link 8 23,020,133 23,069,031 RGD:8554872
RGD:7240710
G TP53 tumor protein p53 JBrowse link 17 7,668,402 7,687,550 RGD:8554872
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 21 43,092,956 43,108,291 RGD:8554872
tongue squamous cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADIPOQ adiponectin, C1Q and collagen domain containing JBrowse link 3 186,842,710 186,858,463 RGD:8694469
G BRINP3 BMP/retinoic acid inducible neural specific 3 JBrowse link 1 190,097,658 190,477,997 RGD:14398487
G CAV2 caveolin 2 JBrowse link 7 116,499,738 116,508,541 RGD:8661771
G CDKN1A cyclin dependent kinase inhibitor 1A JBrowse link 6 36,676,463 36,687,332 RGD:8662376
G EGFR epidermal growth factor receptor JBrowse link 7 55,019,017 55,211,628 RGD:8551769
G FANCB FA complementation group B JBrowse link X 14,690,863 14,873,255 RGD:11049143
G FANCC FA complementation group C JBrowse link 9 95,099,054 95,317,730 RGD:11049143
G FANCF FA complementation group F JBrowse link 11 22,622,533 22,625,823 RGD:11049143
G FANCG FA complementation group G JBrowse link 9 35,073,839 35,079,942 RGD:11049143
G FANCI FA complementation group I JBrowse link 15 89,243,973 89,317,259 RGD:11049143
G FANCL FA complementation group L JBrowse link 2 58,159,243 58,241,681 RGD:11049143
G FANCM FA complementation group M JBrowse link 14 45,135,930 45,200,890 RGD:11049143
G GJA1 gap junction protein alpha 1 JBrowse link 6 121,435,646 121,449,727 RGD:8662380
G HGF hepatocyte growth factor JBrowse link 7 81,699,006 81,770,438 RGD:8548612
G IFNG interferon gamma JBrowse link 12 68,154,768 68,159,740 RGD:8662972
G IL10 interleukin 10 JBrowse link 1 206,767,602 206,772,494 RGD:8662972
G IL2 interleukin 2 JBrowse link 4 122,449,479 122,456,725 RGD:8662972
G JAK3 Janus kinase 3 JBrowse link 19 17,824,782 17,848,071 RGD:11531126
G KDR kinase insert domain receptor JBrowse link 4 55,078,481 55,125,595 RGD:8551769
G MET MET proto-oncogene, receptor tyrosine kinase JBrowse link 7 116,672,196 116,798,386 RGD:8548612
G SOX2 SRY-box transcription factor 2 JBrowse link 3 181,711,925 181,714,436 RGD:8661665
G TP53 tumor protein p53 JBrowse link 17 7,668,402 7,687,550 RGD:8547851

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16489
    disease of cellular proliferation 6562
      cancer 4411
        organ system cancer 4112
          head and neck cancer 73
            head and neck carcinoma 69
              head and neck squamous cell carcinoma 69
                tongue squamous cell carcinoma 22
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.