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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:migraine
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Accession:DOID:6364 term browser browse the term
Definition:A class of disabling primary headache disorders, characterized by recurrent unilateral pulsatile headaches. The two major subtypes are common migraine (without aura) and classic migraine (with aura or neurological symptoms). (International Classification of Headache Disorders, 2nd ed. Cephalalgia 2004: suppl 1)
Synonyms:exact_synonym: MA;   MFTS;   MGAU;   abdominal migraine;   abdominal migraines;   acute confusional migraine;   acute confusional migraines;   cervical migraine syndrome;   cervical migraine syndromes;   hemicrania migraine;   hemicrania migraines;   migraine disorder;   migraine disorders;   migraine headache;   migraine headaches;   migraine variant;   migraine variants;   migraine with or without aura;   migraines;   sick headache;   sick headaches;   status migrainosus
 related_synonym: MGR1;   MGR11;   MGR12;   MGR2;   MGR3;   MGR5;   MGR8;   migraine with or without aura, susceptibility to, 1;   migraine with or without aura, susceptibility to, 11;   migraine with or without aura, susceptibility to, 12;   migraine with or without aura, susceptibility to, 2;   migraine with or without aura, susceptibility to, 3;   migraine with or without aura, susceptibility to, 5;   migraine with or without aura, susceptibility to, 8;   migraine, resistance to
 primary_id: MESH:D008881
 alt_id: OMIM:157300;   OMIM:300125;   OMIM:607498;   OMIM:607508;   OMIM:609570;   OMIM:610209;   OMIM:611706
 xref: ICD10CM:G43;   ICD9CM:346;   NCI:C89715;   OMIM:PS157300
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
 
migraine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:30311386 NCBI chr 1:160,115,759...160,143,591
Ensembl chr 1:160,115,759...160,143,591
JBrowse link
G ATRIP ATR interacting protein IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:30311386 NCBI chr 3:48,446,779...48,467,645
Ensembl chr 3:48,446,710...48,467,645
JBrowse link
G ATRIP ATR interacting protein IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:30311386 NCBI chr 3:48,446,737...48,467,645
Ensembl chr 3:48,446,710...48,467,645
JBrowse link
G BRCA2 BRCA2 DNA repair associated IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:15070707, PMID:16030099, PMID:16758124, PMID:17020472, PMID:18783588, PMID:20104584, PMID:20960228, PMID:21232165, PMID:21553119, PMID:21918853, PMID:22430266, PMID:22460208, PMID:22923021, PMID:23479189, PMID:24033266, PMID:25741868, PMID:26026974, PMID:26295337, PMID:26350514, PMID:26467025, PMID:28127413, PMID:28492532, PMID:28503720, PMID:29084914, PMID:29560538 NCBI chr13:32,315,508...32,400,268
Ensembl chr13:32,315,086...32,400,268
Ensembl chr13:32,315,086...32,400,268
JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A IAGP DNA:missense mutation:cds:p.E1015K(human)
ClinVar Annotator: match by term: Migraine
ClinVar PMID:1564484, PMID:3358708, PMID:8898206, PMID:8988170, PMID:9005860, PMID:9302278, PMID:9403487, PMID:9436730, PMID:9559993, PMID:9879686, PMID:11179022, PMID:11564488, PMID:11723274, PMID:12707077, PMID:14718690, PMID:15300451, PMID:15483044, PMID:15710862, PMID:16043807, PMID:16325861, PMID:16595610, PMID:17142831, PMID:17495624, PMID:17575281, PMID:18498393, PMID:18541804, PMID:18940563, PMID:19484318, PMID:19811514, PMID:20097664, PMID:20129625, PMID:20156848, PMID:20204399, PMID:20233618, PMID:20682717, PMID:21183743, PMID:22249839, PMID:23441182, PMID:23771276, PMID:23831250, PMID:23934111, PMID:25735478, PMID:25741868, PMID:25758715, PMID:26814174, PMID:27476654, PMID:28007337, PMID:28492532, PMID:28742085, PMID:29056246, PMID:29100083, PMID:30283815, PMID:30311386, PMID:24108129 RGD:10054426 NCBI chr19:13,206,442...13,506,479
Ensembl chr19:13,206,442...13,633,025
JBrowse link
G CALCA calcitonin related polypeptide alpha no_association IAGP
EXP
CTD Direct Evidence: marker/mechanism CTD PMID:12574409, PMID:17635592, PMID:21195698, PMID:20959432 RGD:5684017, RGD:5684020 NCBI chr11:14,966,668...14,972,361
Ensembl chr11:14,966,668...14,972,354
JBrowse link
G CAPN3 calpain 3 IAGP ClinVar Annotator: match by term: Migraine headaches ClinVar PMID:7720071, PMID:9266733, PMID:10330340, PMID:10679950, PMID:14578192, PMID:14981715, PMID:15351423, PMID:15689361, PMID:15725583, PMID:16100770, PMID:16141003, PMID:16650086, PMID:17318636, PMID:20635405, PMID:21204801, PMID:21984748, PMID:25741868, PMID:26467025, PMID:27142102, PMID:28492532, PMID:30311386 NCBI chr15:42,359,501...42,412,317
Ensembl chr15:42,359,498...42,412,949
Ensembl chr15:42,359,498...42,412,949
JBrowse link
G CATIP-AS2 CATIP antisense RNA 2 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:30311386 NCBI chr 2:218,326,241...218,357,966
Ensembl chr 2:218,326,889...218,357,966
JBrowse link
G CD40LG CD40 ligand IEP protein:increased expression:serum RGD PMID:21331754 RGD:5490597 NCBI chr  X:136,648,158...136,660,390
Ensembl chr  X:136,648,158...136,660,390
Ensembl chr  X:136,648,158...136,660,390
JBrowse link
G CLCN1 chloride voltage-gated channel 1 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:8533761, PMID:8845168, PMID:10737121, PMID:12163078, PMID:25741868, PMID:25749817, PMID:26467025, PMID:28492532, PMID:29606556, PMID:30311386 NCBI chr 7:143,316,111...143,352,083
Ensembl chr 7:143,316,111...143,352,083
JBrowse link
G DSP desmoplakin IAGP ClinVar Annotator: match by term: Migraine Disorders ClinVar PMID:21606396, PMID:23292937, PMID:23861362, PMID:24033266, PMID:24503780, PMID:25741868, PMID:26230511, PMID:26656175, PMID:27153395, PMID:28492532, PMID:30311386 NCBI chr 6:7,541,671...7,586,714
Ensembl chr 6:7,541,617...7,586,714
JBrowse link
G EDNRA endothelin receptor type A susceptibility IAGP
EXP
DNA:polymorphism:minus-231A>G
ClinVar Annotator: match by term: Migraine, resistance to
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:11376172, PMID:23058564, PMID:11376172 RGD:734916 NCBI chr 4:147,481,097...147,544,954
Ensembl chr 4:147,480,917...147,544,954
JBrowse link
G ESR1 estrogen receptor 1 susceptibility EXP
IAGP
CTD Direct Evidence: marker/mechanism CTD
OMIM
PMID:15133719 NCBI chr 6:151,654,148...152,129,619
Ensembl chr 6:151,656,691...152,129,619
JBrowse link
G FHL5 four and a half LIM domains 5 EXP CTD Direct Evidence: marker/mechanism CTD PMID:23793025 NCBI chr 6:96,562,574...96,618,626
Ensembl chr 6:96,562,548...96,616,636
JBrowse link
G HTR2A 5-hydroxytryptamine receptor 2A EXP CTD Direct Evidence: marker/mechanism CTD PMID:12482207 NCBI chr13:46,831,546...46,898,082
Ensembl chr13:46,831,550...46,897,076
JBrowse link
G HTR7 5-hydroxytryptamine receptor 7 ISO RGD PMID:20236348 RGD:6482182 NCBI chr10:90,738,693...90,858,039
Ensembl chr10:90,740,823...90,858,039
JBrowse link
G LRP1 LDL receptor related protein 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21666692 NCBI chr12:57,128,401...57,213,377
Ensembl chr12:57,128,483...57,213,361
JBrowse link
G MAOA monoamine oxidase A no_association IAGP RGD PMID:15088153 RGD:1600725 NCBI chr  X:43,655,006...43,746,817
Ensembl chr  X:43,654,907...43,746,824
JBrowse link
G MAP2K2 mitogen-activated protein kinase kinase 2 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:25741868 NCBI chr19:4,090,321...4,124,184
Ensembl chr19:4,090,321...4,124,129
Ensembl chr19:4,090,321...4,124,129
JBrowse link
G MFN1 mitofusin 1 ISO protein:decreased expression:trigeminal ganglion (rat) RGD PMID:27984195 RGD:12910755 NCBI chr 3:179,347,709...179,394,936
Ensembl chr 3:179,347,709...179,394,936
JBrowse link
G MTHFR methylenetetrahydrofolate reductase susceptibility IAGP DNA:SNP:cds:677C>T(human) RGD PMID:21635773 RGD:7387244 NCBI chr 1:11,785,723...11,806,103
Ensembl chr 1:11,785,723...11,806,455
Ensembl chr 1:11,785,723...11,806,455
JBrowse link
G NF2 neurofibromin 2 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:25741868, PMID:28492532, PMID:30311386 NCBI chr22:29,603,556...29,698,600
Ensembl chr22:29,603,556...29,698,598
JBrowse link
G NOS3 nitric oxide synthase 3 IAGP associated with Glaucoma;DNA:snp, haplotype:promoter:g.-786T>C (human) RGD PMID:16123422 RGD:7771539 NCBI chr 7:150,991,017...151,014,588
Ensembl chr 7:150,991,017...151,014,588
JBrowse link
G NOTCH3 notch receptor 3 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:25741868, PMID:30311386 NCBI chr19:15,159,038...15,200,995
Ensembl chr19:15,159,038...15,200,995
JBrowse link
G NPPB natriuretic peptide B IEP protein:increased expression:serum RGD PMID:22165670 RGD:5685652 NCBI chr 1:11,857,464...11,858,945
Ensembl chr 1:11,857,464...11,858,945
JBrowse link
G PNKD PNKD metallo-beta-lactamase domain containing IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:30311386 NCBI chr 2:218,270,485...218,346,793
Ensembl chr 2:218,270,392...218,346,793
JBrowse link
G PPOX protoporphyrinogen oxidase IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:25741868 NCBI chr 1:161,165,824...161,178,277
Ensembl chr 1:161,166,056...161,178,013
JBrowse link
G PRDM16 PR/SET domain 16 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21666692 NCBI chr 1:3,069,203...3,438,621
Ensembl chr 1:3,069,168...3,438,621
JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 IAGP ClinVar Annotator: match by term: Migraine Disorders ClinVar PMID:11804990, PMID:19056759, PMID:22581653, PMID:24033266, PMID:25741868, PMID:28492532, PMID:30311386 NCBI chr 3:38,548,061...38,649,687
Ensembl chr 3:38,548,057...38,649,687
Ensembl chr 3:38,548,057...38,649,687
JBrowse link
G SLC2A1 solute carrier family 2 member 1 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:25741868, PMID:30311386 NCBI chr 1:42,925,353...42,958,868
Ensembl chr 1:42,925,353...42,958,893
Ensembl chr 1:42,925,353...42,958,893
JBrowse link
G STIM1 stromal interaction molecule 1 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:25741868 NCBI chr11:3,854,604...4,093,210
Ensembl chr11:3,854,527...4,093,210
JBrowse link
G SUGCT succinyl-CoA:glutarate-CoA transferase EXP CTD Direct Evidence: marker/mechanism CTD PMID:23793025 NCBI chr 7:40,134,887...40,860,763
Ensembl chr 7:40,135,005...40,860,763
Ensembl chr 7:40,135,005...40,860,763
JBrowse link
G TAB2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:25741868 NCBI chr 6:149,217,926...149,411,611
Ensembl chr 6:149,217,926...149,245,554
Ensembl chr 6:149,217,926...149,245,554
JBrowse link
G TBC1D24 TBC1 domain family member 24 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:28492532, PMID:30311386 NCBI chr16:2,475,104...2,509,669
Ensembl chr16:2,475,051...2,509,560
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:16885183 NCBI chr 3:30,606,472...30,694,142
Ensembl chr 3:30,606,601...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
G TNF tumor necrosis factor susceptibility EXP
IAGP
CTD Direct Evidence: marker/mechanism CTD
OMIM
NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TREX1 three prime repair exonuclease 1 IAGP ClinVar Annotator: match by term: Migraine ClinVar PMID:30311386 NCBI chr 3:48,465,830...48,467,645
Ensembl chr 3:48,465,811...48,467,645
JBrowse link
G TRPM8 transient receptor potential cation channel subfamily M member 8 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21666692 NCBI chr 2:233,917,342...234,019,522
Ensembl chr 2:233,917,373...234,019,522
JBrowse link
G TRPV1 transient receptor potential cation channel subfamily V member 1 IAGP DNA:snp:intron:g.IVS2+2841C>T rs222741 (human) RGD PMID:22162417 RGD:7175557 NCBI chr17:3,565,446...3,609,411
Ensembl chr17:3,565,444...3,609,411
JBrowse link
Familial Basilar Migraine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 IAGP ClinVar Annotator: match by term: Migraine, familial basilar ClinVar PMID:16344534 NCBI chr 1:160,115,759...160,143,591
Ensembl chr 1:160,115,759...160,143,591
JBrowse link
familial hemiplegic migraine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 IAGP
ISS
ClinVar Annotator: match by term: Familial hemiplegic migraine
OMIM:141500 | OMIM:602481 | OMIM:609634
ClinVar
MouseDO
PMID:1361034, PMID:11439943, PMID:12023326, PMID:14667076, PMID:15159495, PMID:15174025, PMID:15286158, PMID:16088919, PMID:16344534, PMID:16538223, PMID:17473835, PMID:17877748, PMID:17952365, PMID:18056581, PMID:18414213, PMID:18513263, PMID:18728015, PMID:18957371, PMID:19458722, PMID:19874388, PMID:20837964, PMID:21352219, PMID:21533730, PMID:22117059, PMID:23918834, PMID:23954377, PMID:24396618, PMID:24921013, PMID:25138102, PMID:25741868, PMID:26467025, PMID:27226003, PMID:27864847, PMID:28492532, PMID:28811059, PMID:29062094, PMID:29655203, PMID:29778030, PMID:29956301, PMID:30311386 NCBI chr 1:160,115,759...160,143,591
Ensembl chr 1:160,115,759...160,143,591
JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A ISS OMIM:141500 | OMIM:300125 | OMIM:602481 | OMIM:607516 | OMIM:609634 MouseDO NCBI chr19:13,206,442...13,506,479
Ensembl chr19:13,206,442...13,633,025
JBrowse link
G IGSF8 immunoglobulin superfamily member 8 IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine ClinVar PMID:28492532 NCBI chr 1:160,091,339...160,099,442
Ensembl chr 1:160,091,340...160,098,943
JBrowse link
G KCNJ10 potassium inwardly rectifying channel subfamily J member 10 IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine ClinVar PMID:28492532 NCBI chr 1:160,037,467...160,070,160
Ensembl chr 1:159,998,651...160,070,160
JBrowse link
G KCNJ9 potassium inwardly rectifying channel subfamily J member 9 IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine ClinVar PMID:28492532 NCBI chr 1:160,081,538...160,090,563
Ensembl chr 1:160,081,538...160,090,563
JBrowse link
G SCN1A sodium voltage-gated channel alpha subunit 1 IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine ClinVar PMID:25741868, PMID:28492532 NCBI chr 2:165,984,641...166,149,161
Ensembl chr 2:165,984,641...166,149,214
JBrowse link
G SCN1A-AS1 SCN1A and SCN9A antisense RNA 1 IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine ClinVar NCBI chr 2:165,957,418...166,036,400
Ensembl chr 2:165,957,188...166,390,771
JBrowse link
familial hemiplegic migraine 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1A calcium voltage-gated channel subunit alpha1 A IAGP
EXP
ClinVar Annotator: match by term: Familial hemiplegic migraine type 1
ClinVar Annotator: match by term: Migraine, sporadic hemiplegic, with progressive cerebellar ataxia
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
PMID:1564484, PMID:3358708, PMID:7537420, PMID:8734765, PMID:8898206, PMID:8988170, PMID:9005860, PMID:9302278, PMID:9403487, PMID:9436730, PMID:9488686, PMID:9559993, PMID:9879686, PMID:9915947, PMID:10024348, PMID:10408532, PMID:10408534, PMID:10734061, PMID:10987655, PMID:11061267, PMID:11176968, PMID:11179022, PMID:11409427, PMID:11439943, PMID:11564488, PMID:11723274, PMID:11814735, PMID:11960817, PMID:11971066, PMID:11985388, PMID:12056940, PMID:12111613, PMID:12707077, PMID:12756131, PMID:14718690, PMID:15032980, PMID:15240985, PMID:15300451, PMID:15452324, PMID:15483044, PMID:15710862, PMID:15795222, PMID:16043807, PMID:16325861, PMID:16595610, PMID:16866717, PMID:17142831, PMID:17495624, PMID:17575281, PMID:18056581, PMID:18313928, PMID:18400034, PMID:18498393, PMID:18541804, PMID:18644040, PMID:18940563, PMID:19484318, PMID:19586927, PMID:19811514, PMID:20097664, PMID:20129625, PMID:20156848, PMID:20204399, PMID:20233618, PMID:20682717, PMID:21183743, PMID:22000314, PMID:22190617, PMID:22249839, PMID:22527033, PMID:22784462, PMID:22969264, PMID:23441182, PMID:23771276, PMID:23831250, PMID:23934111, PMID:23961289, PMID:24270521, PMID:24486772, PMID:24498617, PMID:24849341, PMID:25266619, PMID:25274239, PMID:25326635, PMID:25735478, PMID:25741868, PMID:25758715, PMID:25969684, PMID:26467025, PMID:26814174, PMID:27066515, PMID:27290639, PMID:27476654, PMID:28007337, PMID:28169007, PMID:28492532, PMID:28742085, PMID:28978442, PMID:29056246, PMID:29100083, PMID:30063100, PMID:30283815, PMID:30311386, PMID:97053792 NCBI chr19:13,206,442...13,506,479
Ensembl chr19:13,206,442...13,633,025
JBrowse link
G LOC108663985 calcium voltage-gated channel subunit alpha1 A repeat instability region IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine type 1 ClinVar PMID:19586927 NCBI chr19:13,207,859...13,207,898 JBrowse link
familial hemiplegic migraine 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 IAGP
EXP
ClinVar Annotator: match by term: Familial hemiplegic migraine type 2
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
PMID:9579893, PMID:12539047, PMID:12953268, PMID:15133718, PMID:15159495, PMID:15174025, PMID:15308625, PMID:15459825, PMID:16037212, PMID:16088919, PMID:17435187, PMID:17473835, PMID:17877748, PMID:17952365, PMID:18056581, PMID:18414213, PMID:18728015, PMID:18957371, PMID:20720542, PMID:21533730, PMID:22117059, PMID:23954377, PMID:25138102, PMID:25326635, PMID:25741868, PMID:26467025, PMID:28492532, PMID:30311386 NCBI chr 1:160,115,759...160,143,591
Ensembl chr 1:160,115,759...160,143,591
JBrowse link
familial hemiplegic migraine 3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCN1A sodium voltage-gated channel alpha subunit 1 IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine type 3 ClinVar
OMIM
PMID:1893099, PMID:11254444, PMID:11254445, PMID:11359211, PMID:11940708, PMID:12083760, PMID:12566275, PMID:12610651, PMID:12821740, PMID:14504318, PMID:14738421, PMID:15277634, PMID:16054936, PMID:16458823, PMID:17054684, PMID:17347258, PMID:18021921, PMID:18056581, PMID:18076640, PMID:18413471, PMID:18414213, PMID:18804930, PMID:18930999, PMID:19200853, PMID:19236456, PMID:19332696, PMID:19359143, PMID:19522081, PMID:19589774, PMID:20522430, PMID:20600615, PMID:20729507, PMID:20879882, PMID:21248271, PMID:21396429, PMID:21713554, PMID:21719429, PMID:22011963, PMID:22050978, PMID:22071555, PMID:22150645, PMID:22409937, PMID:22550089, PMID:22612257, PMID:22780858, PMID:23195492, PMID:23398611, PMID:23884151, PMID:23895530, PMID:23934111, PMID:24066114, PMID:24136861, PMID:24168886, PMID:24337656, PMID:24464349, PMID:25243660, PMID:25326635, PMID:25348405, PMID:25401298, PMID:25741868, PMID:26096185, PMID:26169758, PMID:26467025, PMID:26544041, PMID:26699486, PMID:26845707, PMID:26990884, PMID:27231140, PMID:27236449, PMID:27864847, PMID:28079314, PMID:28148630, PMID:28202706, PMID:28492532, PMID:29100083, PMID:29358611, PMID:29852413, PMID:30311386, PMID:30619928, PMID:31791873, PMID:32581362 NCBI chr 2:165,984,641...166,149,161
Ensembl chr 2:165,984,641...166,149,214
JBrowse link
G SCN1A-AS1 SCN1A and SCN9A antisense RNA 1 IAGP ClinVar Annotator: match by term: Familial hemiplegic migraine type 3 ClinVar PMID:11254444, PMID:11254445, PMID:11940708, PMID:12610651, PMID:14504318, PMID:15277634, PMID:16054936, PMID:17054684, PMID:17347258, PMID:18021921, PMID:18056581, PMID:18413471, PMID:18414213, PMID:18804930, PMID:18930999, PMID:19332696, PMID:19359143, PMID:19522081, PMID:19589774, PMID:20600615, PMID:20729507, PMID:21396429, PMID:21713554, PMID:22011963, PMID:22550089, PMID:22780858, PMID:23398611, PMID:23884151, PMID:24066114, PMID:24136861, PMID:24168886, PMID:24337656, PMID:24464349, PMID:25326635, PMID:25348405, PMID:25741868, PMID:26169758, PMID:26467025, PMID:26544041, PMID:26990884, PMID:27864847, PMID:28202706, PMID:28492532, PMID:29358611, PMID:30311386, PMID:30619928 NCBI chr 2:165,957,418...166,036,400
Ensembl chr 2:165,957,188...166,390,771
JBrowse link
migraine with aura term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 IAGP RGD PMID:12953268 RGD:1358436 NCBI chr 1:160,115,759...160,143,591
Ensembl chr 1:160,115,759...160,143,591
JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A IAGP DNA:mutation:cds:P.V1457L(human) RGD PMID:10408532 RGD:10054422 NCBI chr19:13,206,442...13,506,479
Ensembl chr19:13,206,442...13,633,025
JBrowse link
G DBH dopamine beta-hydroxylase IAGP DNA:insertion, deletion:5' utr:g.-4767+?--4688-? (human) RGD PMID:17095019 RGD:1625569 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329
JBrowse link
G DRD2 dopamine receptor D2 IAGP DNA:snp:cds:p.H313H (human) RGD PMID:9513185 RGD:1358603 NCBI chr11:113,409,605...113,475,398
Ensembl chr11:113,409,605...113,475,691
JBrowse link
G KCNK18 potassium two pore domain channel subfamily K member 18 susceptibility IAGP
EXP
ClinVar Annotator: match by term: MIGRAINE WITH OR WITHOUT AURA, SUSCEPTIBILITY TO, 13
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:20871611, PMID:25741868, PMID:28492532 NCBI chr10:117,197,489...117,210,299
Ensembl chr10:117,197,489...117,210,299
JBrowse link
G MTHFR methylenetetrahydrofolate reductase susceptibility IAGP DNA:SNP:cds:677C>T(human) RGD PMID:21635773 RGD:7387244 NCBI chr 1:11,785,723...11,806,103
Ensembl chr 1:11,785,723...11,806,455
Ensembl chr 1:11,785,723...11,806,455
JBrowse link
G NOTCH3 notch receptor 3 IAGP ClinVar Annotator: match by term: Migraine with aura ClinVar PMID:30311386, PMID:32581362 NCBI chr19:15,159,038...15,200,995
Ensembl chr19:15,159,038...15,200,995
JBrowse link
G TRPV3 transient receptor potential cation channel subfamily V member 3 IAGP DNA:snp:intron:g.36670T>C rs7217270 (human) RGD PMID:22162417 RGD:7175557 NCBI chr17:3,510,502...3,557,812
Ensembl chr17:3,510,502...3,557,995
Ensembl chr17:3,510,502...3,557,995
JBrowse link
migraine without aura term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASTN2 astrotactin 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:22683712 NCBI chr 9:116,423,112...117,415,057
Ensembl chr 9:116,425,225...117,415,070
JBrowse link
G CALCA calcitonin related polypeptide alpha EXP CTD Direct Evidence: marker/mechanism CTD PMID:11304026, PMID:14659530 NCBI chr11:14,966,668...14,972,361
Ensembl chr11:14,966,668...14,972,354
JBrowse link
G ENO2 enolase 2 IEP protein:increased expression:serum RGD PMID:21293918 RGD:5508769 NCBI chr12:6,914,580...6,923,697
Ensembl chr12:6,913,745...6,923,698
JBrowse link
G LDLR low density lipoprotein receptor IAGP DNA:repeat:exon (human) RGD PMID:12873747 RGD:5490245 NCBI chr19:11,089,432...11,133,820
Ensembl chr19:11,089,462...11,133,820
Ensembl chr19:11,089,462...11,133,820
JBrowse link
G LRP1 LDL receptor related protein 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:22683712 NCBI chr12:57,128,401...57,213,377
Ensembl chr12:57,128,483...57,213,361
JBrowse link
G MEF2D myocyte enhancer factor 2D EXP CTD Direct Evidence: marker/mechanism CTD PMID:22683712 NCBI chr 1:156,463,727...156,500,840
Ensembl chr 1:156,463,727...156,500,779
JBrowse link
G NOTCH3 notch receptor 3 IAGP ClinVar Annotator: match by term: Migraine without aura ClinVar PMID:8878478, PMID:9388399, PMID:12754354, PMID:15229130, PMID:15287509, PMID:15857853, PMID:20071773, PMID:21940951, PMID:24425116, PMID:24886907, PMID:25412914, PMID:25741868, PMID:26467025, PMID:28334938, PMID:32581362 NCBI chr19:15,159,038...15,200,995
Ensembl chr19:15,159,038...15,200,995
JBrowse link
G PHACTR1 phosphatase and actin regulator 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:22683712 NCBI chr 6:12,716,635...13,290,462
Ensembl chr 6:12,716,554...13,287,843
Ensembl chr 6:12,716,554...13,287,843
JBrowse link
G S100B S100 calcium binding protein B IEP protein:increased expression:serum RGD PMID:21293918 RGD:5508769 NCBI chr21:46,598,604...46,605,243
Ensembl chr21:46,598,604...46,605,208
JBrowse link
G TAC1 tachykinin precursor 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:11304026 NCBI chr 7:97,732,086...97,740,472
Ensembl chr 7:97,732,084...97,740,472
JBrowse link
G TNF tumor necrosis factor IAGP RGD PMID:14718719 RGD:1580316 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TRPM8 transient receptor potential cation channel subfamily M member 8 EXP CTD Direct Evidence: marker/mechanism CTD PMID:22683712 NCBI chr 2:233,917,342...234,019,522
Ensembl chr 2:233,917,373...234,019,522
JBrowse link
Sensorineural Deafness and Migraine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MT-TQ mitochondrially encoded tRNA-Gln (CAA/G) IAGP ClinVar Annotator: match by term: Sensorineural deafness and migraine ClinVar PMID:11424923, PMID:25741868, PMID:31965079 NCBI chr MT:4,329...4,400
Ensembl chr MT:4,329...4,400
JBrowse link
Sporadic Hemiplegic Migraine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1A calcium voltage-gated channel subunit alpha1 A IAGP ClinVar Annotator: match by term: Migraine, sporadic hemiplegic ClinVar PMID:10408534, PMID:10734061, PMID:11176968, PMID:11439943, PMID:12056940, PMID:12707077, PMID:17142831, PMID:18056581, PMID:22527033, PMID:24486772, PMID:24498617, PMID:25969684, PMID:26467025 NCBI chr19:13,206,442...13,506,479
Ensembl chr19:13,206,442...13,633,025
JBrowse link
Stormorken syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STIM1 stromal interaction molecule 1 IAGP ClinVar Annotator: match by term: Stormorken syndrome OMIM
ClinVar
PMID:4085141, PMID:12623447, PMID:12745453, PMID:12944247, PMID:12944248, PMID:22190180, PMID:23332920, PMID:24492416, PMID:24570283, PMID:24591628, PMID:24619930, PMID:25044882, PMID:25326555, PMID:25577287, PMID:25741868, PMID:25918394, PMID:26184105, PMID:26436962, PMID:27066587, PMID:27239559, PMID:28492532, PMID:28624464, PMID:29237733 NCBI chr11:3,854,604...4,093,210
Ensembl chr11:3,854,527...4,093,210
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18836
    disease of anatomical entity 17322
      nervous system disease 13416
        central nervous system disease 11456
          brain disease 10641
            Headache Disorders 57
              Primary Headache Disorders 57
                migraine 57
                  Alice in Wonderland Syndrome 0
                  Familial Basilar Migraine 1
                  Ophthalmoplegic Migraine 0
                  Sensorineural Deafness and Migraine 1
                  Stormorken syndrome 1
                  migraine with aura + 14
                  migraine without aura + 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.