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ONTOLOGY REPORT - ANNOTATIONS


Term:Mycobacterium Infections
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Accession:DOID:9001415 term browser browse the term
Definition:Infections with bacteria of the genus MYCOBACTERIUM.
Synonyms:exact_synonym: Mycobacterial Disease;   Mycobacterium Infection
 related_synonym: Mycobacterial Disease, Mendelian Susceptibility to
 primary_id: MESH:D009164;   RDO:0001522;   RDO:0004676
 alt_id: DOID:9001675
For additional species annotation, visit the Alliance of Genome Resources.


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Mycobacterium Infections term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd36 CD36 molecule JBrowse link 4 14,150,309 14,191,498 RGD:6893545
G Defb4 defensin beta 4 JBrowse link 16 75,634,598 75,637,789 RGD:4892261
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:2311490
G Ifngr1 interferon gamma receptor 1 JBrowse link 1 15,062,380 15,080,815 RGD:6480268
RGD:6480429
G Il22 interleukin 22 JBrowse link 7 61,236,037 61,240,502 RGD:5147407
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:5684969
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:11554173
Atypical Mycobacteriosis, Familial, X-Linked 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:8554872
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 156,254,187 156,280,046 RGD:7240710
RGD:8554872
Atypical Mycobacteriosis, Familial, X-Linked 2 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cybb cytochrome b-245 beta chain JBrowse link X 14,578,330 14,610,049 RGD:7240710
RGD:8554872
BCG and Salmonella Infection, Disseminated term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il12b interleukin 12B JBrowse link 10 30,034,447 30,048,774 RGD:8554872
BCG Infection, Generalized Familial term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ifngr1 interferon gamma receptor 1 JBrowse link 1 15,062,380 15,080,815 RGD:8554872
BCG Infection, Generalized Familial Semibenign, Autosomal Dominant term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ifngr1 interferon gamma receptor 1 JBrowse link 1 15,062,380 15,080,815 RGD:8554872
Bovine Tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:11554173
Buruli ulcer disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:8554872
RGD:11554173
RGD:7240710
IMMUNODEFICIENCY 31B term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:7240710
RGD:8554872
Immunodeficiency 38, with Basal Ganglia Calcification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isg15 ISG15 ubiquitin-like modifier JBrowse link 5 173,624,862 173,629,124 RGD:8554872
RGD:7240710
Latent Tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tlr1 toll-like receptor 1 JBrowse link 14 45,062,662 45,065,014 RGD:8554872
lepromatous leprosy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:7411735
G Cfb complement factor B JBrowse link 20 4,536,206 4,542,073 RGD:7411735
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:8694069
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:1331525
leprosy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Batf3 basic leucine zipper ATF-like transcription factor 3 JBrowse link 13 109,713,376 109,726,438 RGD:11554173
G Ccdc88b coiled-coil domain containing 88B JBrowse link 1 222,102,436 222,118,485 RGD:11554173
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:8698644
G Il23r interleukin 23 receptor JBrowse link 4 98,203,788 98,306,729 RGD:11554173
G Lta lymphotoxin alpha JBrowse link 20 4,851,889 4,854,677 RGD:8554872
RGD:7240710
RGD:11554173
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:5508743
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:8554872
G Rab32 RAB32, member RAS oncogene family JBrowse link 1 4,638,663 4,653,220 RGD:11554173
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147585
RGD:5147788
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:5684957
RGD:11554173
RGD:5684972
G Tlr1 toll-like receptor 1 JBrowse link 14 45,062,662 45,065,014 RGD:7246917
RGD:11554173
RGD:7240710
RGD:8554872
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:8553055
RGD:11554173
RGD:7240710
RGD:8554872
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:8694069
Meningeal Tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il4r interleukin 4 receptor JBrowse link 1 196,942,343 196,967,221 RGD:5128510
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:10449456
Multibacillary Leprosy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mrc1 mannose receptor, C type 1 JBrowse link 17 81,352,700 81,433,743 RGD:8554872
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147577
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:5684970
multidrug-resistant tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:5147828
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147828
Mycobacterium avium complex disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:5686838
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:4888520
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:10450731
Nontuberculous Mycobacterium Infections term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:4140395
RGD:4140430
G Ifngr1 interferon gamma receptor 1 JBrowse link 1 15,062,380 15,080,815 RGD:1624283
RGD:8554872
RGD:7240710
G Ifngr2 interferon gamma receptor 2 JBrowse link 11 31,694,339 31,712,611 RGD:8554872
G Il12b interleukin 12B JBrowse link 10 30,034,447 30,048,774 RGD:1600042
RGD:8554872
G Il12rb1 interleukin 12 receptor subunit beta 1 JBrowse link 16 20,370,722 20,383,576 RGD:8554872
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:4889546
G Il1r1 interleukin 1 receptor type 1 JBrowse link 9 46,962,291 47,038,139 RGD:5037237
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:1600087
RGD:8554872
G Tyk2 tyrosine kinase 2 JBrowse link 8 22,118,224 22,149,807 RGD:8554872
Ocular Tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:7364832
Paratuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aoc3 amine oxidase, copper containing 3 JBrowse link 10 89,251,370 89,259,313 RGD:11554173
G C1r complement C1r JBrowse link 4 157,126,060 157,136,825 RGD:11554173
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:11554173
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:11554173
G Gsn gelsolin JBrowse link 3 14,456,106 14,508,922 RGD:11554173
G Tf transferrin JBrowse link 8 111,694,570 111,721,275 RGD:11554173
pleural tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl22 C-C motif chemokine ligand 22 JBrowse link 19 10,674,189 10,681,145 RGD:4891473
G Ccr2 C-C motif chemokine receptor 2 RGD:4145106
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:4145106
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:4143226
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:4143226
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:5129700
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:4144193
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:4889594
pulmonary tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:5128854
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:5686405
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:4890411
G Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 JBrowse link 7 104,670,076 104,951,090 RGD:11554173
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:5129500
G Ccl1 C-C motif chemokine ligand 1 JBrowse link 10 69,534,976 69,537,836 RGD:4891409
RGD:4891408
G Ccl19 C-C motif chemokine ligand 19 JBrowse link 5 58,181,025 58,182,969 RGD:5130906
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:4891439
RGD:11554173
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:4891879
RGD:4892112
G Ccr2 C-C motif chemokine receptor 2 RGD:734715
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:4892094
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:4144205
G Cd209 CD209 molecule JBrowse link 12 2,406,879 2,413,324 RGD:11554173
G Cd86 CD86 molecule JBrowse link 11 67,060,305 67,117,990 RGD:4892339
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:5131284
RGD:5131287
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:5135037
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:5135246
G Cyba cytochrome b-245 alpha chain JBrowse link 19 55,249,634 55,257,824 RGD:4780358
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:4140932
G Gstt1 glutathione S-transferase theta 1 JBrowse link 20 13,799,102 13,816,527 RGD:4140932
G Havcr2 hepatitis A virus cellular receptor 2 JBrowse link 10 31,561,838 31,590,624 RGD:5135524
G Il13 interleukin 13 JBrowse link 10 38,982,909 38,985,466 RGD:4145649
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:4990461
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:4889836
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:4142835
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:4143180
RGD:5147843
RGD:4143179
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:4143180
RGD:4143174
RGD:4143179
G Il27ra interleukin 27 receptor subunit alpha JBrowse link 19 25,151,835 25,163,995 RGD:5128486
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:5128550
G Il4r interleukin 4 receptor JBrowse link 1 196,942,343 196,967,221 RGD:5128510
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:4143257
G Il6r interleukin 6 receptor JBrowse link 2 189,196,180 189,255,987 RGD:5128632
G Irf1 interferon regulatory factor 1 JBrowse link 10 39,109,530 39,116,532 RGD:5128719
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:4889999
G Lta lymphotoxin alpha JBrowse link 20 4,851,889 4,854,677 RGD:4143234
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889452
G Mif macrophage migration inhibitory factor JBrowse link 20 13,715,219 13,732,980 RGD:4891004
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:5130746
G Nat2 N-acetyltransferase 2 JBrowse link 16 23,960,709 23,991,570 RGD:4140932
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:5131510
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:4144122
G Plaur plasminogen activator, urokinase receptor JBrowse link 1 81,328,171 81,344,954 RGD:6483832
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 JBrowse link 2 206,342,066 206,390,348 RGD:6484723
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:5147614
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:4144874
RGD:4144875
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:5684974
G Tap1 transporter 1, ATP binding cassette subfamily B member JBrowse link 20 3,979,302 3,989,669 RGD:6482248
G Tap2 transporter 2, ATP binding cassette subfamily B member JBrowse link 20 3,995,544 4,009,587 RGD:5147851
G Tlr1 toll-like receptor 1 JBrowse link 14 45,062,662 45,065,014 RGD:4889525
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:4145304
RGD:4145320
RGD:4145323
RGD:4145355
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:4144106
RGD:4144122
RGD:4144205
G Tlr9 toll-like receptor 9 JBrowse link 8 114,916,122 114,920,171 RGD:5130704
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4143388
RGD:4142835
RGD:4143395
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:4889849
RGD:4889830
RGD:4889842
RGD:4889845
RGD:4889853
renal tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il4r interleukin 4 receptor JBrowse link 1 196,942,343 196,967,221 RGD:5128510
RGD:7207069
tuberculoid leprosy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tap2 transporter 2, ATP binding cassette subfamily B member JBrowse link 20 3,995,544 4,009,587 RGD:5147851
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:1331525
tuberculosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:6767307
G Btnl2 butyrophilin-like 2 JBrowse link 20 4,140,184 4,156,365 RGD:9685035
RGD:9685036
G Ccl1 C-C motif chemokine ligand 1 JBrowse link 10 69,534,976 69,537,836 RGD:4891408
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:8554872
RGD:11554173
RGD:7240710
G Cd209 CD209 molecule JBrowse link 12 2,406,879 2,413,324 RGD:8554872
RGD:11554173
RGD:7240710
G Cd209c CD209c molecule JBrowse link 12 2,837,991 2,846,709 RGD:5131181
RGD:5131186
G Cd86 CD86 molecule JBrowse link 11 67,060,305 67,117,990 RGD:4892329
G Ciita class II, major histocompatibility complex, transactivator JBrowse link 10 5,212,621 5,260,641 RGD:5491205
G Cish cytokine inducible SH2-containing protein JBrowse link 8 116,054,547 116,059,494 RGD:8554872
RGD:11554173
RGD:7240710
G Coro1a coronin 1A JBrowse link 1 198,123,883 198,128,890 RGD:11554173
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:5135308
G Has1 hyaluronan synthase 1 JBrowse link 1 59,720,612 59,732,409 RGD:9588638
G Hp haptoglobin JBrowse link 19 42,096,255 42,100,805 RGD:11554173
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:8554872
RGD:11554173
RGD:7240710
G Ifngr1 interferon gamma receptor 1 JBrowse link 1 15,062,380 15,080,815 RGD:4144122
RGD:11554173
RGD:7240710
RGD:8554872
G Il12rb1 interleukin 12 receptor subunit beta 1 JBrowse link 16 20,370,722 20,383,576 RGD:8554872
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:4987456
G Il22 interleukin 22 JBrowse link 7 61,236,037 61,240,502 RGD:5147402
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:7240710
RGD:11554173
G Mapkapk3 MAPK activated protein kinase 3 JBrowse link 8 116,012,126 116,046,012 RGD:8554872
G RT1-Ba RT1 class II, locus Ba JBrowse link 20 4,066,133 4,070,726 RGD:11554173
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147605
RGD:5147633
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:5684931
RGD:8554872
RGD:11554173
RGD:7240710
RGD:1331525
G Sp110 SP110 nuclear body protein JBrowse link 9 92,593,909 92,618,867 RGD:8554872
RGD:11554173
RGD:7240710
G Sp140 SP140 nuclear body protein JBrowse link 9 92,618,088 92,665,431 RGD:8554872
G Spp1 secreted phosphoprotein 1 JBrowse link 14 6,673,686 6,679,965 RGD:1581371
G Tirap TIR domain containing adaptor protein JBrowse link 8 36,382,029 36,399,625 RGD:11554173
RGD:7240710
RGD:8554872
G Tlr1 toll-like receptor 1 JBrowse link 14 45,062,662 45,065,014 RGD:7246918
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:8554872
RGD:11554173
RGD:7240710
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:4144821
G Tlr6 toll-like receptor 6 JBrowse link 14 45,024,351 45,041,188 RGD:7246918
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4143229
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:5131209
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:4889839

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15578
    disease by infectious agent 814
      Bacterial Infections and Mycoses 568
        bacterial infectious disease 486
          Gram-Positive Bacterial Infections 152
            Actinomycetales Infections 106
              Mycobacterium Infections 105
                IMMUNODEFICIENCY 31B 1
                Nontuberculous Mycobacterium Infections + 17
                Paratuberculosis 6
                leprosy + 19
                tuberculosis + 80
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.