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ONTOLOGY REPORT - ANNOTATIONS


Term:Ulcer
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Accession:DOID:9005175 term browser browse the term
Definition:A lesion on the surface of the skin or a mucous surface, produced by the sloughing of inflammatory necrotic tissue.
Synonyms:exact_synonym: Ulcers
 primary_id: MESH:D014456;   RDO:0002667
For additional species annotation, visit the Alliance of Genome Resources.


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Ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:8551830
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 7 70,578,564 70,585,074 RGD:11554173
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:8655658
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:10450838
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:632996
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:8693342
G Mmp14 matrix metallopeptidase 14 JBrowse link 15 33,074,441 33,083,666 RGD:1582583
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:1582595
RGD:1582583
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:8693676
G Ppif peptidylprolyl isomerase F JBrowse link 16 1,979,191 1,985,912 RGD:11554173
Buruli ulcer disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:7240710
RGD:8554872
chronic ulcer of skin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:2315843
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:8547587
G Itgb2 integrin subunit beta 2 JBrowse link 20 11,777,773 11,815,647 RGD:11554173
G Lama3 laminin subunit alpha 3 JBrowse link 18 3,704,866 3,941,215 RGD:11554173
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:8547865
G Ngf nerve growth factor JBrowse link 2 204,886,158 204,939,523 RGD:11554173
G Pdgfa platelet derived growth factor subunit A JBrowse link 12 17,734,141 17,756,186 RGD:2292163
G Pdgfra platelet derived growth factor receptor alpha JBrowse link 14 35,527,926 35,581,130 RGD:2292163
G Pepd peptidase D JBrowse link 1 90,820,670 91,285,128 RGD:11554173
G Plcb3 phospholipase C beta 3 JBrowse link 1 222,207,887 222,224,993 RGD:737745
corneal ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:7829721
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:7364739
G Ngf nerve growth factor JBrowse link 2 204,886,158 204,939,523 RGD:11554173
G Serpinf1 serpin family F member 1 JBrowse link 10 62,241,750 62,254,145 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:7829721
decubitus ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:8655548
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:8694460
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:11049489
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:8551845
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:8551845
RGD:8655548
Diabetic Foot term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:5686889
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:6767555
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:6906887
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:7207269
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link 20 4,877,638 4,880,112 RGD:8662463
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:8549356
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:2313575
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:8694068
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:8547813
G Plat plasminogen activator, tissue type JBrowse link 16 74,098,263 74,122,897 RGD:2311669
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:7777174
duodenal ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase JBrowse link 3 4,374,679 4,394,374 RGD:11554173
G Aco1 aconitase 1 JBrowse link 5 56,425,076 56,481,218 RGD:11541091
G Cftr cystic fibrosis transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:1599596
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:8694318
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Pla2g4a phospholipase A2 group IVA JBrowse link 13 67,062,252 67,206,688 RGD:11554173
G Psca prostate stem cell antigen JBrowse link 7 116,090,189 116,091,955 RGD:11554173
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:11554173
G Slc11a2 solute carrier family 11 member 2 JBrowse link 7 142,025,812 142,062,892 RGD:11541091
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:8694318
G Tfrc transferrin receptor JBrowse link 11 71,397,423 71,419,263 RGD:11541091
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:11554173
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:7483560
Foot Ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:2311355
gastric ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adm adrenomedullin JBrowse link 1 175,443,189 175,447,260 RGD:11554173
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:11039418
G Angpt1 angiopoietin 1 JBrowse link 7 81,338,327 81,592,459 RGD:1601496
G Angpt2 angiopoietin 2 JBrowse link 16 75,966,480 76,016,147 RGD:1601496
G Bad BCL2-associated agonist of cell death JBrowse link 1 222,198,516 222,207,459 RGD:10053695
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:10053695
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:10053695
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:13792597
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:5130860
RGD:11554173
G Cblif cobalamin binding intrinsic factor JBrowse link 1 228,118,048 228,132,296 RGD:11049581
G Cck cholecystokinin JBrowse link 8 130,120,525 130,127,515 RGD:11554173
G Cftr cystic fibrosis transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:11567229
G Col18a1 collagen type XVIII alpha 1 chain JBrowse link 20 12,225,202 12,332,858 RGD:1600910
G Egf epidermal growth factor JBrowse link 2 68,820,616 68,895,537 RGD:11554173
G Epo erythropoietin JBrowse link 12 22,274,828 22,278,268 RGD:11554173
G F13a1 coagulation factor XIII A1 chain JBrowse link 17 28,504,650 28,680,015 RGD:708325
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:13792597
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:13792597
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:8655642
G Foxo4 forkhead box O4 JBrowse link X 71,155,284 71,162,158 RGD:10402364
G Ghrl ghrelin and obestatin prepropeptide JBrowse link 4 145,674,157 145,678,066 RGD:11554173
G Hrh3 histamine receptor H3 JBrowse link 3 175,474,310 175,479,395 RGD:1626428
G Iapp islet amyloid polypeptide JBrowse link 4 176,509,863 176,517,903 RGD:11554173
G Idua iduronidase, alpha-L- JBrowse link 14 2,041,828 2,056,762 RGD:12910841
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:11554173
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:11554173
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:13800896
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:13800896
G Mmp13 matrix metallopeptidase 13 JBrowse link 8 5,522,739 5,533,018 RGD:10043177
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:10043177
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:10043177
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:1642033
RGD:11554173
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:2324968
RGD:7364759
G Muc6 mucin 6, oligomeric mucus/gel-forming JBrowse link 1 214,608,453 214,630,524 RGD:7364759
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Nos3 nitric oxide synthase 3 JBrowse link 4 7,321,908 7,342,404 RGD:11554173
RGD:13446410
G Nrg1 neuregulin 1 JBrowse link 16 62,969,573 64,065,063 RGD:11554173
G Oxt oxytocin/neurophysin 1 prepropeptide JBrowse link 3 123,106,694 123,107,534 RGD:2304192
G Oxtr oxytocin receptor JBrowse link 4 144,399,326 144,417,598 RGD:2304192
G Ptger1 prostaglandin E receptor 1 JBrowse link 19 24,799,422 24,803,373 RGD:10043357
G Ptgs1 prostaglandin-endoperoxide synthase 1 JBrowse link 3 15,560,685 15,582,339 RGD:11554173
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:2300260
RGD:11554173
G Sst somatostatin JBrowse link 11 80,358,172 80,359,449 RGD:2303186
G Tek TEK receptor tyrosine kinase JBrowse link 5 113,725,717 113,852,799 RGD:1601496
G Tff1 trefoil factor 1 JBrowse link 20 9,892,124 9,895,984 RGD:2292012
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:10043177
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:11554173
G Vgf VGF nerve growth factor inducible JBrowse link 12 22,677,302 22,680,630 RGD:11554173
Oral Ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:11554173
G Hspd1 heat shock protein family D member 1 JBrowse link 9 61,680,529 61,691,202 RGD:12910477
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:11554173
G Stat4 signal transducer and activator of transcription 4 JBrowse link 9 54,340,649 54,457,753 RGD:5147916
peptic esophagitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:8699511
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:2307110
G Cldn3 claudin 3 JBrowse link 12 21,831,341 21,832,813 RGD:11344880
G Cldn4 claudin 4 JBrowse link 12 24,761,210 24,763,008 RGD:2317602
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:10395244
G F11r F11 receptor JBrowse link 13 89,826,272 89,850,151 RGD:7488941
G Il13 interleukin 13 JBrowse link 10 38,982,909 38,985,466 RGD:2307110
G Il5 interleukin 5 JBrowse link 10 39,066,716 39,069,587 RGD:2307110
G Psmb9 proteasome subunit beta 9 JBrowse link 20 3,973,424 3,978,845 RGD:9854630
G Ptges prostaglandin E synthase JBrowse link 3 9,727,408 9,738,752 RGD:2300085
G Tjp1 tight junction protein 1 JBrowse link 1 126,146,489 126,515,359 RGD:2325133
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:1580209
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:11055189
peptic ulcer disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnr1 cannabinoid receptor 1 JBrowse link 5 49,307,584 49,333,064 RGD:2314640
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:11554173
G Gast gastrin JBrowse link 10 88,245,532 88,248,485 RGD:11554173
G Gsr glutathione-disulfide reductase JBrowse link 16 62,197,617 62,239,987 RGD:10401900
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:4145283
G Hpgd 15-hydroxyprostaglandin dehydrogenase JBrowse link 16 37,457,134 37,495,758 RGD:11667098
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:11554173
G Pla2g4a phospholipase A2 group IVA JBrowse link 13 67,062,252 67,206,688 RGD:8554872
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147609
pyoderma gangrenosum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mefv MEFV, pyrin innate immunity regulator JBrowse link 10 12,045,813 12,056,229 RGD:11554173
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:8657060
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:8657060
G Nlrp3 NLR family, pyrin domain containing 3 JBrowse link 10 45,884,324 45,918,290 RGD:11554173
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:11554173
G Pstpip1 proline-serine-threonine phosphatase-interacting protein 1 JBrowse link 8 60,760,040 60,799,364 RGD:11554173
Pyogenic Arthritis, Pyoderma Gangrenosum, and Acne term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:11554173
G Pstpip1 proline-serine-threonine phosphatase-interacting protein 1 JBrowse link 8 60,760,040 60,799,364 RGD:7240710
RGD:11554173
RGD:8554872
Varicose Ulcer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1626508
G Esr2 estrogen receptor 2 JBrowse link 6 99,163,953 99,214,711 RGD:1626508
RGD:8553061
G Hfe homeostatic iron regulator JBrowse link 17 43,661,276 43,669,327 RGD:1582685
RGD:8694379
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:10412021
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:8694068
G Mir21 microRNA 21 JBrowse link 10 73,902,210 73,902,301 RGD:10412021
Zollinger-Ellison syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:2325683
G Egf epidermal growth factor JBrowse link 2 68,820,616 68,895,537 RGD:2317668
G Igf1r insulin-like growth factor 1 receptor JBrowse link 1 128,924,921 129,213,816 RGD:7242847

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 14759
    Pathological Conditions, Signs and Symptoms 7254
      Pathologic Processes 4755
        Ulcer 121
          Oral Ulcer 4
          Umbilical Cord Ulceration and Intestinal Atresia 0
          chronic ulcer of skin + 37
          corneal ulcer + 5
          peptic ulcer disease + 79
paths to the root