ONTOLOGY REPORT - ANNOTATIONS


Term:Bacterial Lung Diseases
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Accession:DOID:9008559 term browser browse the term
Definition:Pulmonary diseases caused by bacterial infections.
Synonyms:primary_id: RDO:9002453
For additional species annotation, visit the Alliance of Genome Resources.


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aspiration pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ace angiotensin I converting enzyme JBrowse link 10 94,170,766 94,213,831 RGD:4140926
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:4891456
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:4891456
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:4145069
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:4142854
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4142854
bacterial pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:5128828
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:6767559
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:5129508
G C3ar1 complement C3a receptor 1 JBrowse link 4 155,681,767 155,691,240 RGD:5129690
G C5 complement C5 JBrowse link 3
3
14,049,993
14,206,466
14,113,931
14,229,141
RGD:5129707
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:5130748
G Ccl19 C-C motif chemokine ligand 19 JBrowse link 5 58,181,025 58,182,969 RGD:5130918
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:4891443
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:5130905
G Ccr2 C-C motif chemokine receptor 2 RGD:4891443
G Ccr7 C-C motif chemokine receptor 7 JBrowse link 10 87,057,335 87,067,444 RGD:5130918
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:4144197
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:5132268
G Cd80 Cd80 molecule JBrowse link 11 64,815,201 64,855,293 RGD:4892562
G Chuk component of inhibitor of nuclear factor kappa B kinase complex JBrowse link 1 263,848,829 263,884,354 RGD:5133701
G Csf3 colony stimulating factor 3 JBrowse link 10 86,616,785 86,619,160 RGD:5133733
RGD:11039437
G Csf3r colony stimulating factor 3 receptor JBrowse link 5 144,031,353 144,051,966 RGD:5133739
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:5135062
RGD:5135234
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:5135458
RGD:5135459
G Cxcl11 C-X-C motif chemokine ligand 11 JBrowse link 14 17,195,395 17,198,170 RGD:5135459
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:5135065
RGD:5135234
RGD:5135062
G Cxcl3 chemokine (C-X-C motif) ligand 3 JBrowse link 14 18,820,168 18,839,659 RGD:5135234
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:4145490
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:5135459
G Cxcr3 C-X-C motif chemokine receptor 3 JBrowse link X 71,614,346 71,616,997 RGD:5135459
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 JBrowse link 5 119,546,458 119,564,843 RGD:1625385
G Defb4 defensin beta 4 JBrowse link 16 75,634,598 75,637,789 RGD:4892266
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:6893486
G Fcgr2a Fc fragment of IgG receptor IIa JBrowse link 13 91,146,878 91,163,691 RGD:5129707
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:4145490
G Ifnar1 interferon alpha and beta receptor subunit 1 JBrowse link 11 31,640,407 31,666,839 RGD:5490274
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:5000754
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:4889153
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:4889913
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:4143205
RGD:10755357
G Il1rl1 interleukin 1 receptor-like 1 JBrowse link 9 47,133,483 47,184,316 RGD:5144223
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:4143205
RGD:4143206
G Il22 interleukin 22 JBrowse link 7 61,236,037 61,240,502 RGD:5147404
G Irf1 interferon regulatory factor 1 JBrowse link 10 39,109,530 39,116,532 RGD:5128725
G Irf3 interferon regulatory factor 3 JBrowse link 1 100,992,244 100,997,202 RGD:4891951
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:4993468
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:5128871
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889477
G Mc1r melanocortin 1 receptor JBrowse link 19 56,215,420 56,219,987 RGD:5687324
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:5130727
RGD:5129533
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:5130992
G Nod1 nucleotide-binding oligomerization domain containing 1 JBrowse link 4 85,123,965 85,175,206 RGD:5131449
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:5131449
G Pdpn podoplanin JBrowse link 5 161,947,137 161,981,441 RGD:2292375
G Pecam1 platelet and endothelial cell adhesion molecule 1 JBrowse link 10 94,850,971 94,913,202 RGD:724645
G Pgf placental growth factor JBrowse link 6 108,994,016 109,004,598 RGD:6483601
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:4144840
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:4143464
G Sftpb surfactant protein B JBrowse link 4 100,166,855 100,175,941 RGD:4143403
RGD:4143464
G Sftpc surfactant protein C JBrowse link 15 52,211,538 52,214,480 RGD:4144114
RGD:4143464
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:4143403
RGD:4143464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6892945
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:4145337
RGD:4889533
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:4144172
RGD:4144197
G Tlr5 toll-like receptor 5 JBrowse link 13 101,364,784 101,385,764 RGD:5129503
G Tlr6 toll-like receptor 6 JBrowse link 14 45,024,351 45,041,188 RGD:4889533
G Tlr9 toll-like receptor 9 JBrowse link 8 114,916,122 114,920,171 RGD:5130719
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4143476
RGD:10755357
RGD:10450564
RGD:10449451
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:5131429
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:5131429
Mycoplasma pneumoniae pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:5128857
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:4892091
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:4891914
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:4892091
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:5131292
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:5143920
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:10755754
G Il13 interleukin 13 JBrowse link 10 38,982,909 38,985,466 RGD:4145765
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4145765
Pneumococcal Pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:4890435
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:5130163
RGD:5129523
RGD:5129509
G C5 complement C5 JBrowse link 3
3
14,049,993
14,206,466
14,113,931
14,229,141
RGD:5130159
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:4892130
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:4144788
G Chi3l1 chitinase 3 like 1 JBrowse link 13 51,022,844 51,030,797 RGD:4892626
G Crhr1 corticotropin releasing hormone receptor 1 JBrowse link 10 92,191,473 92,233,662 RGD:5147472
G Crhr2 corticotropin releasing hormone receptor 2 JBrowse link 4 85,286,371 85,329,374 RGD:5147472
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:5131293
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:5134957
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:5135285
G Defb4 defensin beta 4 JBrowse link 16 75,634,598 75,637,789 RGD:11554173
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:4145366
G Hp haptoglobin JBrowse link 19 42,096,255 42,100,805 RGD:5147385
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:5000755
G Il15ra interleukin 15 receptor subunit alpha JBrowse link 17 70,451,861 70,481,838 RGD:5000755
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:4888531
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:4889960
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:4143255
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:5128869
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:5128846
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:11554173
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:11554173
G Masp2 mannan-binding lectin serine peptidase 2 JBrowse link 5 165,415,105 165,429,857 RGD:11554173
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889477
RGD:4889478
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:4891950
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:4143519
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:11554173
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:4145321
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4143479
RGD:4145366
Pneumonia, Staphylococcal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd86 CD86 molecule JBrowse link 11 67,060,305 67,117,990 RGD:4892562
G Csf3 colony stimulating factor 3 JBrowse link 10 86,616,785 86,619,160 RGD:11039478
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:7205474
G Ifnar1 interferon alpha and beta receptor subunit 1 JBrowse link 11 31,640,407 31,666,839 RGD:5490273
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:7364825
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:4996474
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:4142828
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:5131444
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:13432209

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 14823
    disease by infectious agent 807
      Bacterial Infections and Mycoses 566
        bacterial infectious disease 485
          Bacterial Lung Diseases 93
            bacterial pneumonia + 93
            pneumonic tularemia 0
Path 2
Term Annotations click to browse term
  disease 14823
    disease of anatomical entity 13997
      respiratory system disease 2375
        lower respiratory tract disease 1412
          lung disease 1370
            Bacterial Lung Diseases 93
              bacterial pneumonia + 93
              pneumonic tularemia 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.