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ONTOLOGY REPORT - ANNOTATIONS


Term:colorectal cancer
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Accession:DOID:9256 term browser browse the term
Definition:A large intestine cancer that is located in the colon and/or located in the rectum.
Synonyms:exact_synonym: MALIGNANT COLORECTAL NEOPLASM;   colorectal cancers
 alt_id: RDO:9002015
For additional species annotation, visit the Alliance of Genome Resources.


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colorectal cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrb1 adhesion G protein-coupled receptor B1 JBrowse link 7 115,766,484 115,828,514 RGD:13831353
G Akap9 A-kinase anchoring protein 9 JBrowse link 4 27,195,346 27,331,582 RGD:8554872
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:1643334
RGD:8554872
RGD:13592920
RGD:13209139
G Akt2 AKT serine/threonine kinase 2 JBrowse link 1 84,400,939 84,451,223 RGD:2313394
G Antxr1 ANTXR cell adhesion molecule 1 JBrowse link 4 118,946,267 119,131,202 RGD:9684945
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:13592920
RGD:8554872
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:8554872
G Atf7 activating transcription factor 7 JBrowse link 7 144,131,382 144,223,463 RGD:11055686
G Axin2 axin 2 JBrowse link 10 97,212,483 97,238,824 RGD:13592920
RGD:8554872
G Bambi BMP and activin membrane-bound inhibitor JBrowse link 17 56,905,419 56,909,675 RGD:14390154
RGD:14390156
G Barhl2 BarH-like homeobox 2 JBrowse link 14 4,362,717 4,367,614 RGD:14392684
G Bcl10 BCL10, immune signaling adaptor JBrowse link 2 251,805,392 251,814,957 RGD:8554872
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:8554872
G Brca2 BRCA2, DNA repair associated JBrowse link 12 503,660 544,754 RGD:8554872
G Brip1 BRCA1 interacting protein C-terminal helicase 1 JBrowse link 10 73,507,009 73,632,742 RGD:11252105
RGD:11252117
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase JBrowse link 3 120,373,604 120,404,910 RGD:1600539
RGD:13592920
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B JBrowse link 3 110,367,949 110,420,471 RGD:13592920
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:13210582
RGD:13210584
G Chek2 checkpoint kinase 2 JBrowse link 12 51,845,574 51,878,098 RGD:2289706
RGD:8554872
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:2289840
RGD:13592920
RGD:8554872
G Ctnnbl1 catenin, beta like 1 JBrowse link 3 154,212,245 154,373,170 RGD:9850254
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:5132879
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 1 213,511,892 213,522,195 RGD:14700897
G Dcc DCC netrin 1 receptor JBrowse link 18 66,518,213 67,629,801 RGD:8554872
RGD:13592920
G Dlc1 DLC1 Rho GTPase activating protein JBrowse link 16 58,776,489 59,247,752 RGD:13592920
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:11251746
G Eef1e1 eukaryotic translation elongation factor 1 epsilon 1 JBrowse link 17 26,785,017 26,795,723 RGD:10401218
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:5131455
RGD:5131632
RGD:5131871
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:13592920
G Erbb4 erb-b2 receptor tyrosine kinase 4 JBrowse link 9 75,021,790 76,178,936 RGD:2289977
G Esr2 estrogen receptor 2 JBrowse link 6 99,163,953 99,214,711 RGD:7364791
G F7 coagulation factor VII JBrowse link 16 81,824,610 81,834,923 RGD:11049532
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:13592920
RGD:8554872
G Flcn folliculin JBrowse link 10 46,153,185 46,172,331 RGD:13592920
RGD:8554872
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 JBrowse link 5 62,718,733 62,751,345 RGD:8554872
RGD:13592920
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 8 85,059,051 85,097,471 RGD:11049536
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:11353274
RGD:14700961
RGD:14700958
RGD:14700954
G Gstt1 glutathione S-transferase theta 1 JBrowse link 20 13,799,102 13,816,527 RGD:11353274
RGD:14700995
RGD:14700986
RGD:14700954
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:9590193
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:9590193
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:9590193
G Hdac7 histone deacetylase 7 JBrowse link 7 139,280,396 139,319,108 RGD:9590193
G Hfe homeostatic iron regulator JBrowse link 17 43,661,276 43,669,327 RGD:8694350
G Hk1 hexokinase 1 JBrowse link 20 31,911,460 31,979,780 RGD:11353883
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:9999439
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:9999439
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:6480104
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:14975287
G Kdm3b lysine demethylase 3B JBrowse link 18 27,593,823 27,631,129 RGD:9586735
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:9587755
G Kif18a kinesin family member 18A JBrowse link 3 100,366,168 100,426,867 RGD:11554203
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:14398748
G L1cam L1 cell adhesion molecule JBrowse link X 156,901,244 156,928,064 RGD:6483011
G Lig4 DNA ligase 4 JBrowse link 16 85,331,771 85,339,496 RGD:8694072
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:13217416
G Mir200c microRNA 200c JBrowse link 4 157,236,786 157,236,854 RGD:13217416
G Mir224 microRNA 224 JBrowse link X 152,223,754 152,223,835 RGD:14398749
G Mir30b microRNA 30b JBrowse link 7 109,282,662 109,282,747 RGD:13432037
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:1625107
G Mlh3 mutL homolog 3 JBrowse link 6 109,059,386 109,095,876 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:2293519
RGD:8554872
G Msh6 mutS homolog 6 JBrowse link 6 11,644,565 11,662,389 RGD:8554872
G Mutyh mutY DNA glycosylase JBrowse link 5 135,663,328 135,675,348 RGD:8554872
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:10412740
RGD:8554872
G Nras NRAS proto-oncogene, GTPase JBrowse link 2 205,553,119 205,563,716 RGD:8554872
RGD:13592920
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
RGD:13592920
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta JBrowse link 5 166,602,053 166,628,028 RGD:13432038
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:13432046
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:8554872
RGD:13592920
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:8554872
RGD:13592920
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:8554872
G Ptpn12 protein tyrosine phosphatase, non-receptor type 12 JBrowse link 4 10,631,129 10,702,390 RGD:8554872
G Ptprj protein tyrosine phosphatase, receptor type, J JBrowse link 3 79,233,519 79,390,956 RGD:8554872
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:13432050
RGD:13432052
G Rad54b RAD54 homolog B JBrowse link 5 25,140,531 25,214,469 RGD:8554872
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:13432052
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:14974237
G Sema4a semaphorin 4A JBrowse link 2 187,799,568 187,823,014 RGD:8554872
G Serpina1 serpin family A member 1 JBrowse link 6 127,610,241 127,632,265 RGD:14695524
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:8554872
G Smad7 SMAD family member 7 JBrowse link 18 71,395,830 71,424,164 RGD:13592920
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:13592920
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:13592920
G Tcf3 transcription factor 3 JBrowse link 7 12,146,642 12,168,400 RGD:13432058
RGD:13432063
RGD:13432062
RGD:13432061
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:13450926
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:13432086
RGD:13432088
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:13432081
RGD:13432086
G Tgfb3 transforming growth factor, beta 3 JBrowse link 6 109,913,757 109,936,217 RGD:13432088
G Tnfsf9 TNF superfamily member 9 JBrowse link 9 9,909,942 9,912,276 RGD:2317353
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:13592920
RGD:8554872
G Trpv3 transient receptor potential cation channel, subfamily V, member 3 JBrowse link 10 59,829,755 59,863,780 RGD:7183081
G Txnip thioredoxin interacting protein JBrowse link 2 198,683,168 198,686,971 RGD:1642760
G Xpo5 exportin 5 JBrowse link 9 17,125,201 17,163,170 RGD:11041733
G Xrcc2 X-ray repair cross complementing 2 JBrowse link 4 5,842,013 5,860,516 RGD:8554872
ascending colon cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:8554872
colon adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa7 annexin A7 JBrowse link 15 4,254,470 4,281,296 RGD:2292654
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:1601201
RGD:8554872
G ApcPirc APC, WNT signaling pathway regulator; polyposis in the rat colon RGD:1601201
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:734633
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:10450245
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1599637
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:9587838
G Fech ferrochelatase JBrowse link 18 59,941,992 59,975,192 RGD:14700888
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:10402080
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:13210775
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:13210775
G Mgmt O-6-methylguanine-DNA methyltransferase JBrowse link 1 209,237,255 209,464,189 RGD:1599637
G Msh6 mutS homolog 6 JBrowse link 6 11,644,565 11,662,389 RGD:8554872
G Pcsk5 proprotein convertase subtilisin/kexin type 5 JBrowse link 1 236,031,988 236,313,858 RGD:11556207
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:5685670
G Pik3r3 phosphoinositide-3-kinase regulatory subunit 3 JBrowse link 5 135,069,972 135,145,633 RGD:13432053
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:13432049
RGD:13432051
G Rad54l RAD54 like JBrowse link 5 134,948,511 134,978,125 RGD:8554872
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link 5 150,032,999 150,060,769 RGD:11039405
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link 6 104,611,026 104,640,033 RGD:11039405
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:11039405
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:11038656
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:13432089
G Vegfc vascular endothelial growth factor C JBrowse link 16 40,440,371 40,555,178 RGD:2315488
colon cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr1a actin related protein 1A JBrowse link 1 266,123,864 266,142,621 RGD:13831341
G Acvr2a activin A receptor type 2A JBrowse link 3 32,947,901 33,034,598 RGD:2301065
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
G Akt3 AKT serine/threonine kinase 3 JBrowse link 13 95,076,308 95,348,913 RGD:13209140
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 7 31,699,309 31,784,192 RGD:13703116
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
G Apcm1Kyo APC, WNT signaling pathway regulator; mutant 1, Kyo RGD:12792250
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:625559
G Bad BCL2-associated agonist of cell death JBrowse link 1 222,198,516 222,207,459 RGD:10053668
G Bcl10 BCL10, immune signaling adaptor JBrowse link 2 251,805,392 251,814,957 RGD:8554872
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:10053668
G Bik BCL2-interacting killer JBrowse link 7 124,390,924 124,410,449 RGD:14394819
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:8554872
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1599497
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:9586351
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:13209142
RGD:13209143
G Casp7 caspase 7 JBrowse link 1 277,190,557 277,242,779 RGD:13209143
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:5135051
G Ccl3 C-C motif chemokine ligand 3 JBrowse link 10 70,869,516 70,871,066 RGD:5135051
G Ccnd2 cyclin D2 JBrowse link 4 159,674,885 159,697,207 RGD:2289181
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:8554872
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:9587457
G Chka choline kinase alpha JBrowse link 1 219,076,618 219,126,221 RGD:10401869
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:6903278
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:8554872
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 1 213,511,892 213,522,195 RGD:14700924
G Esr2 estrogen receptor 2 JBrowse link 6 99,163,953 99,214,711 RGD:8694174
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:8554872
G Flcn folliculin JBrowse link 10 46,153,185 46,172,331 RGD:8554872
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link 3 105,203,309 105,214,989 RGD:8554872
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:10045586
G Hs3st2 heparan sulfate-glucosamine 3-sulfotransferase 2 JBrowse link 1 191,344,979 191,474,143 RGD:2317633
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta JBrowse link 16 74,177,233 74,230,809 RGD:7495781
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:11534627
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:9590225
G Lcn2 lipocalin 2 JBrowse link 3 11,414,189 11,417,534 RGD:2316492
G Map2k3 mitogen activated protein kinase kinase 3 JBrowse link 10 45,089,455 45,110,802 RGD:7495808
G Mir126b microRNA 126b JBrowse link 3 4,042,488 4,042,560 RGD:13432043
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:8554872
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:2316492
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:8554872
G Mt-co1 mitochondrially encoded cytochrome c oxidase I JBrowse link MT 5,323 6,867 RGD:8554872
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:8554872
G Mt-cyb mitochondrially encoded cytochrome b JBrowse link MT 14,136 15,278 RGD:8554872
G Mt-nd4l mitochondrially encoded NADH 4L dehydrogenase JBrowse link MT 9,870 10,166 RGD:8554872
G Mtus1 microtubule associated scaffold protein 1 JBrowse link 16 54,240,892 54,386,131 RGD:2317016
G Muc2 mucin 2, oligomeric mucus/gel-forming JBrowse link 1 214,663,929 214,693,197 RGD:7349368
RGD:7349371
G Mutyh mutY DNA glycosylase JBrowse link 5 135,663,328 135,675,348 RGD:8554872
G Nanog Nanog homeobox JBrowse link 4 155,531,906 155,539,268 RGD:7240527
G Ncoa6 nuclear receptor coactivator 6 JBrowse link 3 150,919,317 150,990,391 RGD:9590137
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:5133247
G Nras NRAS proto-oncogene, GTPase JBrowse link 2 205,553,119 205,563,716 RGD:8554872
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 16 20,415,109 20,424,982 RGD:13432043
G Pik3r5 phosphoinositide-3-kinase, regulatory subunit 5 JBrowse link 10 55,013,686 55,078,986 RGD:13432047
G Pms2 PMS1 homolog 2, mismatch repair system component JBrowse link 12 12,714,394 12,738,654 RGD:8554872
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:8554872
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:8554872
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:1601444
RGD:8554872
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:5685669
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:12859043
G Ptger3 prostaglandin E receptor 3 JBrowse link 2 263,895,093 263,979,682 RGD:9850265
G Ptpn12 protein tyrosine phosphatase, non-receptor type 12 JBrowse link 4 10,631,129 10,702,390 RGD:8554872
G Ptprj protein tyrosine phosphatase, receptor type, J JBrowse link 3 79,233,519 79,390,956 RGD:8554872
G Rad54b RAD54 homolog B JBrowse link 5 25,140,531 25,214,469 RGD:8554872
G Reg1a regenerating family member 1 alpha JBrowse link 4 109,497,962 109,500,626 RGD:9850131
G Scg5 secretogranin V JBrowse link 3 105,235,065 105,279,475 RGD:8554872
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:1601371
RGD:8554872
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:11038730
G Tdgf1 teratocarcinoma-derived growth factor 1 JBrowse link 8 119,215,266 119,220,909 RGD:11561894
G Tff3 trefoil factor 3 JBrowse link 20 9,850,800 9,855,481 RGD:7349371
G Tgfb3 transforming growth factor, beta 3 JBrowse link 6 109,913,757 109,936,217 RGD:13432091
G Tgfbr2 transforming growth factor, beta receptor 2 JBrowse link 8 124,310,288 124,399,345 RGD:2301065
RGD:8554872
G Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b JBrowse link 15 51,433,853 51,464,215 RGD:2325778
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8554872
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:5135051
G Xrcc2 X-ray repair cross complementing 2 JBrowse link 4 5,842,013 5,860,516 RGD:8554872
colon carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
G Axin2 axin 2 JBrowse link 10 97,212,483 97,238,824 RGD:8554872
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:8554872
G Bcl10 BCL10, immune signaling adaptor JBrowse link 2 251,805,392 251,814,957 RGD:8554872
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:11567267
RGD:8554872
G Brca2 BRCA2, DNA repair associated JBrowse link 12 503,660 544,754 RGD:8554872
G Brip1 BRCA1 interacting protein C-terminal helicase 1 JBrowse link 10 73,507,009 73,632,742 RGD:8554872
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase JBrowse link 3 120,373,604 120,404,910 RGD:8554872
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B JBrowse link 3 110,367,949 110,420,471 RGD:8554872
G Crkl CRK like proto-oncogene, adaptor protein JBrowse link 11 87,338,606 87,356,644 RGD:7488899
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:8554872
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:5135268
G Dcc DCC netrin 1 receptor JBrowse link 18 66,518,213 67,629,801 RGD:8554872
G Dlc1 DLC1 Rho GTPase activating protein JBrowse link 16 58,776,489 59,247,752 RGD:8554872
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:8554872
G Fancc FA complementation group C JBrowse link 17 826,512 955,703 RGD:8554872
G Fance FA complementation group E JBrowse link 20 7,888,927 7,906,142 RGD:8554872
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:8554872
G Flcn folliculin JBrowse link 10 46,153,185 46,172,331 RGD:8554872
G Flt1 FMS-related tyrosine kinase 1 JBrowse link 12 9,033,993 9,205,886 RGD:8554872
G Flt3lg fms-related tyrosine kinase 3 ligand JBrowse link 1 101,126,006 101,131,413 RGD:11049504
G Flt4 fms-related tyrosine kinase 4 JBrowse link 10 35,078,782 35,120,296 RGD:8554872
G Hpgd 15-hydroxyprostaglandin dehydrogenase JBrowse link 16 37,457,134 37,495,758 RGD:5688759
G Igf2r insulin-like growth factor 2 receptor JBrowse link 1 48,176,095 48,264,482 RGD:14985218
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:8554872
G Mcc MCC regulator of WNT signaling pathway JBrowse link 18
1
35,683,185
12,006,663
35,817,117
12,128,849
RGD:8554872
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:8554872
G Mlh3 mutL homolog 3 JBrowse link 6 109,059,386 109,095,876 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:8554872
G Mt-nd1 mitochondrially encoded NADH dehydrogenase 1 JBrowse link MT 2,740 3,694 RGD:8554872
G Mutyh mutY DNA glycosylase JBrowse link 5 135,663,328 135,675,348 RGD:8554872
G Nras NRAS proto-oncogene, GTPase JBrowse link 2 205,553,119 205,563,716 RGD:8554872
G Pdgfrl platelet-derived growth factor receptor-like JBrowse link 16 54,386,269 54,450,426 RGD:8554872
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:8554872
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:8554872
G Prf1 perforin 1 JBrowse link 20 30,915,294 30,920,804 RGD:6482822
G Ptpn12 protein tyrosine phosphatase, non-receptor type 12 JBrowse link 4 10,631,129 10,702,390 RGD:8554872
G Ptprj protein tyrosine phosphatase, receptor type, J JBrowse link 3 79,233,519 79,390,956 RGD:8554872
G Rad54b RAD54 homolog B JBrowse link 5 25,140,531 25,214,469 RGD:8554872
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit JBrowse link 20 44,803,664 44,961,362 RGD:8554872
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:13432074
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:13432074
RGD:13432084
G Tnfrsf17 TNF receptor superfamily member 17 JBrowse link 10 4,252,097 4,258,335 RGD:2317311
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:5131434
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:5131434
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8554872
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:5133430
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link 16 20,668,925 20,671,127 RGD:11352739
colorectal adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:2312343
G Abcb1b ATP-binding cassette, subfamily B (MDR/TAP), member 1B JBrowse link 4 22,225,123 22,307,577 RGD:1598563
G Arpc2 actin related protein 2/3 complex, subunit 2 JBrowse link 9 81,518,163 81,548,871 RGD:11049173
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:11353854
G Bcl2l2 Bcl2-like 2 JBrowse link 15 33,543,774 33,549,165 RGD:14394422
G Birc7 baculoviral IAP repeat-containing 7 JBrowse link 3 176,438,335 176,443,864 RGD:13217408
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:11567230
G Brd8 bromodomain containing 8 JBrowse link 18 27,375,645 27,423,989 RGD:9587763
G Cd44 CD44 molecule (Indian blood group) JBrowse link 3 92,695,083 92,783,820 RGD:2289356
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:9589082
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:13210753
G Gata6 GATA binding protein 6 JBrowse link 18 2,415,821 2,447,087 RGD:13208874
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:13210767
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:14700996
G Gstt1 glutathione S-transferase theta 1 JBrowse link 20 13,799,102 13,816,527 RGD:14700996
RGD:14701003
G Hpca hippocalcin JBrowse link 5 147,295,124 147,305,757 RGD:9693683
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:13210753
G Kcnh1 potassium voltage-gated channel subfamily H member 1 JBrowse link 13 110,920,712 111,232,291 RGD:9693694
G Kmt2b lysine methyltransferase 2B JBrowse link 1 89,022,889 89,042,176 RGD:9588601
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:13210782
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:13210782
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:13217408
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase JBrowse link 4 147,532,040 147,592,769 RGD:13217408
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:13210753
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:2317418
G Utp23 UTP23, small subunit processome component JBrowse link 7 91,384,329 91,389,605 RGD:11041896
COLORECTAL CANCER 10 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:8554872
RGD:7240710
colorectal carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr2 actin related protein 2 JBrowse link 14 104,338,486 104,375,840 RGD:11570560
G Actr3 actin related protein 3 JBrowse link 13 41,695,520 41,738,622 RGD:11570560
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:7245559
G Akap12 A-kinase anchoring protein 12 JBrowse link 1 40,816,130 40,906,582 RGD:14348959
G Antxr1 ANTXR cell adhesion molecule 1 JBrowse link 4 118,946,267 119,131,202 RGD:9684940
G Bmi1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 17 85,360,439 85,370,283 RGD:1580058
G Brd7 bromodomain containing 7 JBrowse link 19 19,672,780 19,701,484 RGD:9586444
G Calu calumenin JBrowse link 4 56,625,611 56,653,112 RGD:2316232
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:9587355
G Cd59 CD59 molecule JBrowse link 3 94,010,481 94,028,660 RGD:1600485
G Chi3l1 chitinase 3 like 1 JBrowse link 13 51,022,844 51,030,797 RGD:4892637
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:11564625
RGD:14700936
G Gstt1 glutathione S-transferase theta 1 JBrowse link 20 13,799,102 13,816,527 RGD:14700936
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 7 18,516,253 18,554,536 RGD:10054273
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:5112894
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:9588975
G Msh3 mutS homolog 3 JBrowse link 2 21,790,048 21,931,791 RGD:1625103
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:14402406
G Psmb9 proteasome 20S subunit beta 9 JBrowse link 20 3,973,424 3,978,845 RGD:6483362
G Strap serine/threonine kinase receptor associated protein JBrowse link 4 171,730,629 171,744,877 RGD:1581429
Oligodontia-Colorectal Cancer Syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin2 axin 2 JBrowse link 10 97,212,483 97,238,824 RGD:7240710
RGD:8554872
G Gna13 G protein subunit alpha 13 JBrowse link 10 97,647,196 97,680,030 RGD:8554872
G Rgs9 regulator of G-protein signaling 9 JBrowse link 10 97,509,971 97,582,188 RGD:8554872
rectum adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
rectum cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:14975288
sigmoid colon cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:8554872
G Msh6 mutS homolog 6 JBrowse link 6 11,644,565 11,662,389 RGD:8554872
Somatic Colonic Adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rad54l RAD54 like JBrowse link 5 134,948,511 134,978,125 RGD:8554872

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15619
    disease of anatomical entity 14948
      gastrointestinal system disease 4373
        intestinal disease 1386
          Intestinal Neoplasms 661
            Colorectal Neoplasms 640
              colorectal cancer 221
                COLORECTAL CANCER 10 1
                Oligodontia-Colorectal Cancer Syndrome 3
                colon cancer + 128
                colorectal carcinoma + 65
                rectum cancer + 2
Path 2
Term Annotations click to browse term
  disease 15619
    disease of anatomical entity 14948
      gastrointestinal system disease 4373
        Gastrointestinal Diseases 2465
          Gastrointestinal Neoplasms 1826
            Intestinal Neoplasms 661
              intestinal cancer 224
                large intestine cancer 221
                  colorectal cancer 221
                    COLORECTAL CANCER 10 1
                    Oligodontia-Colorectal Cancer Syndrome 3
                    colon cancer + 128
                    colorectal carcinoma + 65
                    rectum cancer + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.