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ONTOLOGY REPORT - ANNOTATIONS


Term:single strand break repair
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Accession:GO:0000012 term browser browse the term
Definition:The repair of single strand breaks in DNA. Repair of such breaks is mediated by the same enzyme systems as are used in base excision repair.


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single strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor ISO (PMID:17396150) RGD PMID:17396150 NCBI chr 4:119,514,822...119,568,764
Ensembl chr 4:119,514,840...119,568,736
JBrowse link
G Aptx aprataxin ISO
IBA
(MGI:MGI:3665365|PMID:16964241)
PMID:21873635
(PMID:14755728), (PMID:17519253)
RGD PMID:14755728, PMID:16964241, PMID:17519253, PMID:21873635 MGI:MGI:3665365, RGD:13792537 NCBI chr 5:56,987,714...57,009,481
Ensembl chr 5:56,987,909...57,008,859
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:29545921) RGD PMID:29545921 NCBI chr16:8,734,028...8,804,610
Ensembl chr16:8,734,035...8,804,610
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO (PMID:29545921) RGD PMID:29545921 NCBI chr 2:39,434,617...39,473,392
Ensembl chr 2:39,434,634...39,472,017
JBrowse link
G Lig4 DNA ligase 4 ISO (PMID:8798671) RGD PMID:8798671 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
G LOC102549471 short transient receptor potential channel 2-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:167,158,720...167,180,052 JBrowse link
G Sirt1 sirtuin 1 ISO
IEA
(PMID:20097625)
GO_REF:0000107
RGD
Ensembl
PMID:20097625 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:3818340 (MGI:MGI:3763975|PMID:17948061), (MGI:MGI:3763978|PMID:17914460)
(PMID:15811850), (PMID:17600775)
Ensembl
RGD
PMID:15811850, PMID:17600775, PMID:17914460, PMID:17948061, PMID:21873635 GO_REF:0000107, MGI:MGI:3763975, MGI:MGI:3763978, RGD:13792537 NCBI chr 6:123,895,860...123,963,688
Ensembl chr 6:123,897,956...123,963,675
JBrowse link
G Tnp1 transition protein 1 ISO
ISS
(PMID:12743712)
GO_REF:0000024
RGD
UniProt
PMID:12743712 GO_REF:0000024 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
G Trpc2 transient receptor potential cation channel subfamily C member 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:167,180,103...167,192,456
Ensembl chr 1:167,169,442...167,192,801
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:81,412,635...81,441,680
Ensembl chr 1:81,413,353...81,441,678
JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly (ADP-ribose) polymerase 1 ISO UniProtKB:P18887 (PMID:28002403)
UniProtKB:Q60596 (MGI:MGI:5902647|PMID:28002403)
RGD PMID:28002403 MGI:MGI:5902647 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO UniProtKB:P09874 (PMID:28002403)
UniProtKB:P11103 (MGI:MGI:5902647|PMID:28002403)
RGD PMID:28002403 MGI:MGI:5902647 NCBI chr 1:81,412,635...81,441,680
Ensembl chr 1:81,413,353...81,441,678
JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly (ADP-ribose) polymerase 1 ISO (MGI:MGI:5616996|PMID:25378300) RGD PMID:25378300 MGI:MGI:5616996 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular macromolecule metabolic process 8535
          DNA metabolic process 919
            DNA repair 482
              single strand break repair 12
                negative regulation of single strand break repair + 0
                positive regulation of single strand break repair + 2
                regulation of single strand break repair + 2
                single-strand break repair via homologous recombination + 0
                telomere single strand break repair + 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              DNA metabolic process 919
                DNA repair 482
                  single strand break repair 12
                    negative regulation of single strand break repair + 0
                    positive regulation of single strand break repair + 2
                    regulation of single strand break repair + 2
                    single-strand break repair via homologous recombination + 0
                    telomere single strand break repair + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.