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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome assembly
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Accession:GO:0000045 term browser browse the term
Definition:The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms:exact_synonym: autophagic vacuole assembly;   autophagosome biosynthesis;   autophagosome formation
 narrow_synonym: PAS formation
 related_synonym: autophagic vacuole formation


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autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,905,454 47,103,205 RGD:9068941
G ATG101 autophagy related 101 JBrowse link 12 37,462,533 37,470,277 RGD:9068941
G ATG12 autophagy related 12 JBrowse link 5 116,979,738 116,992,288 RGD:9068941
G ATG13 autophagy related 13 JBrowse link 11 47,126,380 47,182,848 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 14 54,226,720 54,272,018 RGD:9068941
G ATG16L2 autophagy related 16 like 2 JBrowse link 11 71,115,768 71,144,128 RGD:9068941
G ATG2A autophagy related 2A JBrowse link 11 63,591,896 63,614,902 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 3 116,606,467 116,635,209 RGD:9068941
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 2B 247,702,880 247,738,985 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 107,871,201 108,027,064 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,554,100 11,833,638 RGD:9068941
G ATG9A autophagy related 9A JBrowse link 2B 225,067,959 225,078,272 RGD:9068941
G ATG9B autophagy related 9B JBrowse link 7 154,752,882 154,764,744 RGD:9068941
G BAG3 BAG cochaperone 3 JBrowse link 10 119,654,366 119,665,964 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,719,781 14,733,286 RGD:9068941
G CTSD cathepsin D JBrowse link 11 1,821,442 1,832,970 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 1 110,654,623 110,744,543 RGD:9068941
G EMC6 ER membrane protein complex subunit 6 JBrowse link 17 3,715,387 3,716,332 RGD:9068941
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 6 148,133,563 148,238,519 RGD:9068941
G IRGM immunity related GTPase M JBrowse link 5 152,276,981 152,332,575 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 32,018,279 32,020,411 RGD:9068941
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 14 105,749,588 105,810,253 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 38,754,789 38,882,042 RGD:9068941
G PSEN1 presenilin 1 JBrowse link 14 72,579,024 72,663,876 RGD:9068941
G RAB1A RAB1A, member RAS oncogene family JBrowse link 2A 66,274,809 66,318,290 RGD:9068941
G RAB23 RAB23, member RAS oncogene family JBrowse link 6 58,375,559 58,411,104 RGD:9068941
G RAB33B RAB33B, member RAS oncogene family JBrowse link 4 143,123,480 143,147,147 RGD:9068941
G RAB7A RAB7A, member RAS oncogene family JBrowse link 3 133,214,246 133,233,403 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 46,430,131 46,521,722 RGD:9068941
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 2B 223,930,456 223,952,939 RGD:9068941
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 140,967,399 140,989,653 RGD:9068941
G STX12 syntaxin 12 JBrowse link 1 28,076,625 28,127,666 RGD:9068941
G SYNPO2 synaptopodin 2 JBrowse link 4 121,596,427 121,806,647 RGD:9068941
G TMEM41B transmembrane protein 41B JBrowse link 11 9,149,234 9,183,383 RGD:9068941
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 20 32,160,155 32,169,227 RGD:9068941
G UBQLN1 ubiquilin 1 JBrowse link 9 82,597,507 82,645,587 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 133,980,316 134,007,687 RGD:9068941
G WDR45 WD repeat domain 45 JBrowse link X 49,228,153 49,233,960 RGD:9068941
G WDR45B WD repeat domain 45B JBrowse link 17 82,829,546 82,859,600 RGD:9068941
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 67,748,201 67,784,313 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,467,334 5,510,538 RGD:9068941
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 104,500,965 104,568,046 RGD:9068941
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 14,719,781 14,733,286 RGD:9068941
G CHMP4A charged multivesicular body protein 4A JBrowse link 14 23,109,521 23,114,253 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 31,237,881 31,286,065 RGD:9068941
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 32,429,265 32,446,860 RGD:9068941
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 11 124,186,241 124,236,403 RGD:9068941
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 2A 37,344,067 37,390,521 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 49,205,930 49,350,462 RGD:9068941
G MTM1 myotubularin 1 JBrowse link X 150,174,762 150,255,381 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 16 29,015,155 29,016,987 RGD:9068941
G PHF23 PHD finger protein 23 JBrowse link 17 7,252,024 7,256,756 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,627,364 20,646,377 RGD:9068941
G SCFD1 sec1 family domain containing 1 JBrowse link 14 29,602,185 29,709,133 RGD:9068941
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 37,884,037 37,897,031 RGD:9068941
G TMEM39A transmembrane protein 39A JBrowse link 3 123,461,860 123,498,656 RGD:9068941
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 14,719,781 14,733,286 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 1 110,654,623 110,744,543 RGD:9068941
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 127,245,508 127,297,645 RGD:9068941
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 23,066,771 23,141,230 RGD:9068941
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 17 18,746,712 18,782,296 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 12 31,582,725 31,594,808 RGD:9068941
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 2B 139,125,374 139,248,010 RGD:9068941
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 1 200,757,097 200,878,799 RGD:9068941
G RALB RAS like proto-oncogene B JBrowse link 2B 120,760,879 120,802,697 RGD:9068941
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 88,077,401 88,121,056 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 133,980,316 134,007,687 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 2B 239,392,990 239,436,766 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 107,871,201 108,027,064 RGD:9068941
G IRGM immunity related GTPase M JBrowse link 5 152,276,981 152,332,575 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,467,334 5,510,538 RGD:9068941
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 2B 239,392,990 239,436,766 RGD:9068941
G MFN2 mitofusin 2 JBrowse link 1 11,945,849 11,981,077 RGD:9068941
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 14 105,749,588 105,810,253 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 38,754,789 38,882,042 RGD:9068941
G STX17 syntaxin 17 JBrowse link 9 99,107,182 99,174,648 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,467,334 5,510,538 RGD:9068941
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 28,001,498 28,026,192 RGD:9068941
G IFT20 intraflagellar transport 20 JBrowse link 17 28,941,303 28,948,129 RGD:9068941
G IFT88 intraflagellar transport 88 JBrowse link 13 20,205,881 20,331,204 RGD:9068941
G MTMR3 myotubularin related protein 3 JBrowse link 22 28,728,450 28,878,055 RGD:9068941
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 2B 213,628,997 213,721,299 RGD:9068941
G RAB1B RAB1B, member RAS oncogene family JBrowse link 11 64,959,957 64,968,843 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 6 32,705,674 32,708,076 RGD:9068941
G TBC1D14 TBC1 domain family member 14 JBrowse link 4 6,978,791 7,100,472 RGD:9068941
G UBQLN2 ubiquilin 2 JBrowse link X 56,981,696 56,985,979 RGD:9068941
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 104,500,965 104,568,046 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12351
    cellular process 11471
      cellular component organization or biogenesis 4921
        cellular component biogenesis 2321
          cellular component assembly 2207
            organelle assembly 703
              autophagosome assembly 75
                engulfment of target by autophagosome 1
                negative regulation of autophagosome assembly 14
                positive regulation of autophagosome assembly 11
                protein lipidation involved in autophagosome assembly 4
                protein localization to phagophore assembly site 6
                regulation of autophagosome assembly + 33
                substrate localization to autophagosome 1
Path 2
Term Annotations click to browse term
  biological_process 12351
    cellular process 11471
      cellular component organization or biogenesis 4921
        cellular component organization 4841
          organelle organization 2981
            vacuole organization 142
              autophagosome organization 78
                autophagosome assembly 75
                  engulfment of target by autophagosome 1
                  negative regulation of autophagosome assembly 14
                  positive regulation of autophagosome assembly 11
                  protein lipidation involved in autophagosome assembly 4
                  protein localization to phagophore assembly site 6
                  regulation of autophagosome assembly + 33
                  substrate localization to autophagosome 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.