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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome assembly
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Accession:GO:0000045 term browser browse the term
Definition:The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms:exact_synonym: autophagic vacuole assembly;   autophagosome biosynthesis;   autophagosome formation
 narrow_synonym: PAS formation
 related_synonym: autophagic vacuole formation


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autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link NW_004955422 1,455,392 1,644,368 RGD:9068941
G Atg101 autophagy related 101 JBrowse link NW_004955547 2,436,974 2,446,849 RGD:9068941
G Atg12 autophagy related 12 JBrowse link NW_004955408 35,607,541 35,620,878 RGD:9068941
G Atg13 autophagy related 13 JBrowse link NW_004955422 1,398,646 1,432,440 RGD:9068941
G Atg14 autophagy related 14 JBrowse link NW_004955466 13,898,311 13,972,506 RGD:9068941
G Atg16l2 autophagy related 16 like 2 JBrowse link NW_004955414 18,600,904 18,618,048 RGD:9068941
G Atg2a autophagy related 2A JBrowse link NW_004955422 20,261,749 20,290,879 RGD:9068941
G Atg3 autophagy related 3 JBrowse link NW_004955427 12,881,454 12,906,399 RGD:9068941
G Atg4b autophagy related 4B cysteine peptidase JBrowse link NW_004955542 164,969 192,498 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004955411 31,501,191 31,646,407 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004955429 14,076,976 14,301,034 RGD:9068941
G Atg9a autophagy related 9A JBrowse link NW_004955453 14,203,798 14,214,760 RGD:9068941
G Atg9b autophagy related 9B JBrowse link NW_004955491 5,458,152 5,467,260 RGD:9068941
G Bag3 BAG cochaperone 3 JBrowse link NW_004955551 446,322 468,329 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004955451 16,616,595 16,625,731 RGD:9068941
G Ctsd cathepsin D JBrowse link NW_004955422 13,576,315 13,584,267 RGD:9068941
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link NW_004955435 12,531,651 12,626,969 RGD:9068941
G Emc6 ER membrane protein complex subunit 6 JBrowse link NW_004955467 13,144,659 13,146,434 RGD:9068941
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link NW_004955436 14,925,452 14,982,357 RGD:9068941
G Irgm immunity related GTPase M JBrowse link NW_004955408 2,338,510 2,344,566 RGD:9068941
G Map1lc3a microtubule associated protein 1 light chain 3 alpha JBrowse link NW_004955422 26,774,466 26,776,024 RGD:9068941
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link NW_004955538 3,559,738 3,616,862 RGD:9068941
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link NW_004955402 28,081,150 28,195,305 RGD:9068941
G Psen1 presenilin 1 JBrowse link NW_004955523 2,128,529 2,210,737 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004955424 19,393,589 19,421,373 RGD:9068941
G Rab23 RAB23, member RAS oncogene family JBrowse link NW_004955502 2,947,170 2,980,634 RGD:9068941
G Rab33b RAB33B, member RAS oncogene family JBrowse link NW_004955428 4,192,357 4,211,740 RGD:9068941
G Rab7a RAB7A, member RAS oncogene family JBrowse link NW_004955429 15,103,792 15,167,498 RGD:9068941
G Rb1cc1 RB1 inducible coiled-coil 1 JBrowse link NW_004955454 12,201,566 12,257,383 RGD:9068941
G Rufy4 RUN and FYVE domain containing 4 JBrowse link NW_004955453 15,243,125 15,259,086 RGD:9068941
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link NW_004955418 1,091,022 1,097,064 RGD:9068941
G Stx12 syntaxin 12 JBrowse link NW_004955452 6,977,813 7,015,281 RGD:9068941
G Synpo2 synaptopodin 2 JBrowse link NW_004955428 21,152,210 21,323,254 RGD:9068941
G Tmem41b transmembrane protein 41B JBrowse link NW_004955414 25,063,497 25,082,901 RGD:9068941
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link NW_004955422 26,640,239 26,649,291 RGD:9068941
G Ubqln1 ubiquilin 1 JBrowse link NW_004955432 3,575,034 3,617,029 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004955482 760,200 777,133 RGD:9068941
G Vmp1 vacuole membrane protein 1 JBrowse link NW_004955451 3,265,109 3,370,610 RGD:9068941
G Wdr45 WD repeat domain 45 JBrowse link NW_004955543 597,796 604,163 RGD:9068941
G Wdr45b WD repeat domain 45B JBrowse link NW_004955506 515,364 556,507 RGD:9068941
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link NW_004955478 4,309,975 4,341,107 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004955460 10,090,343 10,132,724 RGD:9068941
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link NW_004955460 14,774,545 14,860,783 RGD:9068941
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link NW_004955451 16,616,595 16,625,731 RGD:9068941
G Chmp4b charged multivesicular body protein 4B JBrowse link NW_004955422 27,482,239 27,526,798 RGD:9068941
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link NW_004955437 396,736 411,144 RGD:9068941
G Fez1 fasciculation and elongation protein zeta 1 JBrowse link NW_004955412 26,477,995 26,530,686 RGD:9068941
G Fez2 fasciculation and elongation protein zeta 2 JBrowse link NW_004955441 4,421,936 4,456,070 RGD:9068941
G Lrrk2 leucine rich repeat kinase 2 JBrowse link NW_004955505 84,324 216,923 RGD:9068941
G Mtm1 myotubularin 1 JBrowse link NW_004955498 6,329,402 6,444,708 RGD:9068941
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link NW_004955493 6,746,380 6,747,763 RGD:9068941
G Phf23 PHD finger protein 23 JBrowse link NW_004955467 9,671,133 9,675,434 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004955452 1,171,115 1,186,338 RGD:9068941
G Scfd1 sec1 family domain containing 1 JBrowse link NW_004955409 29,805,909 29,903,208 RGD:9068941
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link NW_004955568 1,559,519 1,587,782 RGD:9068941
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link NW_004955478 11,002,174 11,015,123 RGD:9068941
G Tmem39a transmembrane protein 39A JBrowse link NW_004955427 19,118,631 19,184,315 RGD:9068941
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link NW_004955451 16,616,595 16,625,731 RGD:9068941
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link NW_004955435 12,531,651 12,626,969 RGD:9068941
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link NW_004955419 1,121,127 1,154,356 RGD:9068941
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link NW_004955429 6,231,135 6,399,672 RGD:9068941
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link NW_004955451 13,842,814 13,856,301 RGD:9068941
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link NW_004955458 5,315,083 5,327,617 RGD:9068941
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link NW_004955440 2,551,015 2,645,938 RGD:9068941
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link NW_004955520 3,411,504 3,483,703 RGD:9068941
G Ralb RAS like proto-oncogene B JBrowse link NW_004955459 9,533,081 9,574,464 RGD:9068941
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link NW_004955423 7,393,186 7,414,199 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004955482 760,200 777,133 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16 like 1 JBrowse link NW_004955453 2,884,497 2,917,581 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004955411 31,501,191 31,646,407 RGD:9068941
G Irgm immunity related GTPase M JBrowse link NW_004955408 2,338,510 2,344,566 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004955460 10,090,343 10,132,724 RGD:9068941
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16 like 1 JBrowse link NW_004955453 2,884,497 2,917,581 RGD:9068941
G Mfn2 mitofusin 2 JBrowse link NW_004955486 1,937,873 1,962,577 RGD:9068941
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link NW_004955538 3,559,738 3,616,862 RGD:9068941
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link NW_004955402 28,081,150 28,195,305 RGD:9068941
G Stx17 syntaxin 17 JBrowse link NW_004955419 25,674,771 25,741,357 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004955460 10,090,343 10,132,724 RGD:9068941
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link NW_004955472 7,299,092 7,337,591 RGD:9068941
G Ift20 intraflagellar transport 20 JBrowse link NW_004955481 4,799,548 4,807,751 RGD:9068941
G Ift88 intraflagellar transport 88 JBrowse link NW_004955497 1,338,959 1,454,788 RGD:9068941
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link NW_004955457 6,749,226 6,841,855 RGD:9068941
G Rab1b RAB1B, member RAS oncogene family JBrowse link NW_004955422 19,039,741 19,047,088 RGD:9068941
G Rnf5 ring finger protein 5 JBrowse link NW_004955437 643,133 645,528 RGD:9068941
G Tbc1d14 TBC1 domain family member 14 JBrowse link NW_004955514 3,485,975 3,553,840 RGD:9068941
G Ubqln2 ubiquilin 2 JBrowse link NW_004955475 3,260,209 3,263,586 RGD:9068941
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link NW_004955460 14,774,545 14,860,783 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11828
    cellular process 11038
      cellular component organization or biogenesis 4818
        cellular component biogenesis 2280
          cellular component assembly 2166
            organelle assembly 694
              autophagosome assembly 75
                engulfment of target by autophagosome 1
                negative regulation of autophagosome assembly 14
                positive regulation of autophagosome assembly 11
                protein lipidation involved in autophagosome assembly 4
                protein localization to phagophore assembly site 6
                regulation of autophagosome assembly + 32
                substrate localization to autophagosome 1
Path 2
Term Annotations click to browse term
  biological_process 11828
    cellular process 11038
      cellular component organization or biogenesis 4818
        cellular component organization 4738
          organelle organization 2918
            vacuole organization 141
              autophagosome organization 80
                autophagosome assembly 75
                  engulfment of target by autophagosome 1
                  negative regulation of autophagosome assembly 14
                  positive regulation of autophagosome assembly 11
                  protein lipidation involved in autophagosome assembly 4
                  protein localization to phagophore assembly site 6
                  regulation of autophagosome assembly + 32
                  substrate localization to autophagosome 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.