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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome assembly
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Accession:GO:0000045 term browser browse the term
Definition:The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms:exact_synonym: autophagic vacuole assembly;   autophagosome biosynthesis;   autophagosome formation
 narrow_synonym: PAS formation
 related_synonym: autophagic vacuole formation


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autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 18 42,903,815 43,073,918 RGD:9068941
G ATG101 autophagy related 101 JBrowse link 27 2,931,595 2,934,914 RGD:13508589
G ATG12 autophagy related 12 JBrowse link 11 5,531,062 5,543,034 RGD:13508589
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG14 autophagy related 14 JBrowse link 8 31,199,097 31,234,200 RGD:13508589
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:13508589
G ATG16L2 autophagy related 16 like 2 JBrowse link 21 25,404,667 25,433,456 RGD:13508589
RGD:9068941
G ATG2A autophagy related 2A JBrowse link 18 52,258,070 52,277,953 RGD:13508589
G ATG2B autophagy related 2B JBrowse link 8 65,039,960 65,110,811 RGD:13508589
G ATG3 autophagy related 3 JBrowse link 33 17,046,951 17,073,203 RGD:13508589
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 25 51,494,316 51,518,683 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:13508589
G ATG9A autophagy related 9A JBrowse link 37 25,768,287 25,777,529 RGD:13508589
G ATG9B autophagy related 9B JBrowse link 16 15,072,436 15,082,867 RGD:9068941
G BAG3 BAG cochaperone 3 JBrowse link 28 29,792,612 29,815,466 RGD:9068941
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G BECN2 beclin 2 JBrowse link 7 33,318,124 33,356,388 RGD:13508589
G CTSD cathepsin D JBrowse link 18 46,010,440 46,019,457 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 6 42,612,130 42,681,161 RGD:13508589
G EMC6 ER membrane protein complex subunit 6 JBrowse link 9 47,497,354 47,498,861 RGD:13508589
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 36,835,775 36,977,653 RGD:13508589
G GABARAP GABA type A receptor-associated protein JBrowse link 5 32,207,879 32,209,976 RGD:13508589
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 27 35,783,203 35,791,576 RGD:13508589
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 5 75,230,214 75,240,724 RGD:13508589
G LOC606863 immunity-related GTPase family M protein-like JBrowse link 11 506,981 523,338 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 24 23,672,343 23,673,937 RGD:13508589
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 5 65,669,553 65,683,445 RGD:13508589
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 7 33,364,569 33,369,080 RGD:13508589
G NSFL1C NSFL1 cofactor JBrowse link 24 19,575,543 19,599,002 RGD:13508589
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 8 72,672,861 72,721,655 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 7 48,663,381 48,800,350 RGD:13508589
G PSEN1 presenilin 1 JBrowse link 8 46,495,551 46,569,532 RGD:13508589
G RAB19 RAB19, member RAS oncogene family JBrowse link 16 8,544,353 8,562,714 RGD:13508589
G RAB1A RAB1A, member RAS oncogene family JBrowse link 10 64,564,351 64,590,654 RGD:13508589
G RAB1B RAB1B, member RAS oncogene family JBrowse link 18 51,026,975 51,034,356 RGD:13508589
G RAB23 RAB23, member RAS oncogene family JBrowse link 12 24,388,530 24,438,956 RGD:13508589
G RAB33B RAB33B, member RAS oncogene family JBrowse link 19 3,256,790 3,273,198 RGD:13508589
G RAB43 RAB43, member RAS oncogene family JBrowse link 20 2,979,094 3,020,496 RGD:13508589
G RAB7A RAB7A, member RAS oncogene family JBrowse link 20 2,704,716 2,776,518 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:13508589
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 37 24,809,365 24,830,254 RGD:9068941
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 34,783,947 34,792,204 RGD:13508589
G STX12 syntaxin 12 JBrowse link 2 72,546,178 72,582,706 RGD:13508589
G SYNPO2 synaptopodin 2 JBrowse link 32 37,844,844 38,026,755 RGD:9068941
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 18 49,784,480 49,794,361 RGD:13508589
G TMEM41B transmembrane protein 41B JBrowse link 21 32,598,075 32,632,614 RGD:13508589
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 29 39,575,782 39,593,389 RGD:13508589
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 24 23,768,208 23,801,268 RGD:13508589
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 7 57,665,209 57,752,959 RGD:13508589
G UBQLN1 ubiquilin 1 JBrowse link 1 75,767,345 75,812,278 RGD:13508589
G UBXN2A UBX domain protein 2A JBrowse link 17 18,446,856 18,491,797 RGD:13508589
G UBXN2B UBX domain protein 2B JBrowse link 29 9,229,070 9,258,269 RGD:13508589
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:9068941
G VMP1 vacuole membrane protein 1 JBrowse link 9 34,197,045 34,340,401 RGD:13508589
G WDR45 WD repeat domain 45 JBrowse link X 42,221,261 42,237,535 RGD:13508589
G WDR45B WD repeat domain 45B RGD:13508589
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 9 15,115,098 15,147,893 RGD:13508589
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 6 10,385,781 10,498,071 RGD:13508589
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G CHMP4A charged multivesicular body protein 4A JBrowse link 8 4,195,766 4,200,101 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 24 22,995,677 23,050,084 RGD:13508589
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 12 1,341,202 1,354,602 RGD:13508589
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 5 9,001,927 9,044,330 RGD:9068941
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 17 29,043,449 29,086,104 RGD:13508589
G LRRK2 leucine rich repeat kinase 2 JBrowse link 27 13,282,824 13,420,917 RGD:13508589
G MTM1 myotubularin 1 JBrowse link X 118,820,644 118,917,166 RGD:13508589
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 6 18,222,367 18,224,015 RGD:13508589
G PHF13 PHD finger protein 13 JBrowse link 5 60,434,218 60,441,930 RGD:13508589
G PHF23 PHD finger protein 23 JBrowse link 5 32,202,636 32,207,738 RGD:13508589
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
G SCFD1 sec1 family domain containing 1 JBrowse link 8 9,970,724 10,077,123 RGD:13508589
G SEC22B SEC22 homolog B, vesicle trafficking protein JBrowse link 17 57,094,038 57,115,891 RGD:13508589
G SMCR8 SMCR8-C9orf72 complex subunit RGD:13508589
G TMEM39A transmembrane protein 39A JBrowse link 33 23,083,979 23,121,269 RGD:9068941
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 6 42,612,130 42,681,161 RGD:13508589
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 55,855,576 55,894,915 RGD:13508589
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 2 10,464,019 10,642,365 RGD:13508589
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 9 23,445,350 23,473,195 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 10 1,670,076 1,680,975 RGD:13508589
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 19 37,861,844 38,006,433 RGD:9068941
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 38 14,927,670 15,025,554 RGD:13508589
G RALB RAS like proto-oncogene B JBrowse link 19 29,820,006 29,868,345 RGD:13508589
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 6 61,439,414 61,471,414 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G LOC606863 immunity-related GTPase family M protein-like JBrowse link 11 506,981 523,338 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:9068941
G ATG9A autophagy related 9A JBrowse link 37 25,768,287 25,777,529 RGD:13508589
G MFN2 mitofusin 2 JBrowse link 2 84,284,719 84,310,715 RGD:13508589
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 8 72,672,861 72,721,655 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 7 48,663,381 48,800,350 RGD:13508589
G STX17 syntaxin 17 JBrowse link 11 56,885,874 56,951,714 RGD:13508589
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 7 57,665,209 57,752,959 RGD:13508589
G WDR45 WD repeat domain 45 JBrowse link X 42,221,261 42,237,535 RGD:13508589
G WDR45B WD repeat domain 45B RGD:13508589
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 9 15,115,098 15,147,893 RGD:13508589
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C11H9orf72 chromosome 11 C9orf72 homolog JBrowse link 11 45,664,942 45,688,777 RGD:13508589
G IFT20 intraflagellar transport 20 JBrowse link 9 42,581,117 42,587,830 RGD:13508589
G IFT88 intraflagellar transport 88 JBrowse link 25 17,414,965 17,551,405 RGD:9068941
G MTMR3 myotubularin related protein 3 JBrowse link 26 23,047,500 23,187,694 RGD:13508589
G NPRL2 NPR2 like, GATOR1 complex subunit JBrowse link 20 39,005,699 39,009,183 RGD:13508589
G NPRL3 NPR3 like, GATOR1 complex subunit JBrowse link 6 40,351,757 40,394,599 RGD:13508589
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 37 16,537,095 16,620,427 RGD:9068941
G RAB1B RAB1B, member RAS oncogene family JBrowse link 18 51,026,975 51,034,356 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 12 1,571,277 1,575,151 RGD:13508589
G TBC1D12 TBC1 domain family member 12 JBrowse link 28 8,519,852 8,642,836 RGD:13508589
G TBC1D14 TBC1 domain family member 14 JBrowse link 3 58,992,743 59,097,581 RGD:13508589
G UBQLN2 ubiquilin 2 JBrowse link X 47,860,923 47,864,282 RGD:9068941
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 6 10,385,781 10,498,071 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16041
    cellular process 15295
      cellular component organization or biogenesis 5948
        cellular component biogenesis 2904
          cellular component assembly 2691
            organelle assembly 848
              autophagosome assembly 96
                engulfment of target by autophagosome 1
                negative regulation of autophagosome assembly 16
                positive regulation of autophagosome assembly 11
                protein lipidation involved in autophagosome assembly 4
                protein localization to phagophore assembly site 12
                regulation of autophagosome assembly + 38
                substrate localization to autophagosome 1
Path 2
Term Annotations click to browse term
  biological_process 16041
    cellular process 15295
      cellular component organization or biogenesis 5948
        cellular component organization 5785
          organelle organization 3644
            vacuole organization 175
              autophagosome organization 101
                autophagosome assembly 96
                  engulfment of target by autophagosome 1
                  negative regulation of autophagosome assembly 16
                  positive regulation of autophagosome assembly 11
                  protein lipidation involved in autophagosome assembly 4
                  protein localization to phagophore assembly site 12
                  regulation of autophagosome assembly + 38
                  substrate localization to autophagosome 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.