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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome assembly
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Accession:GO:0000045 term browser browse the term
Definition:The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms:exact_synonym: autophagic vacuole assembly;   autophagosome biosynthesis;   autophagosome formation
 narrow_synonym: PAS formation
 related_synonym: autophagic vacuole formation


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autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 2 15,935,354 16,119,082 RGD:14298760
G ATG101 autophagy related 101 JBrowse link 5 17,418,085 17,425,770 RGD:14298760
G ATG12 autophagy related 12 JBrowse link 2 119,948,443 119,965,702 RGD:14298760
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:14298760
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G ATG16L2 autophagy related 16 like 2 JBrowse link 9 7,346,973 7,360,189 RGD:14298760
RGD:9068941
G ATG2A autophagy related 2A JBrowse link 2 7,261,819 7,282,614 RGD:14298760
G ATG2B autophagy related 2B JBrowse link 7 117,506,298 117,586,651 RGD:14298760
G ATG3 autophagy related 3 JBrowse link 13 147,279,110 147,309,597 RGD:14298760
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 15 140,223,903 140,245,590 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:14298760
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:14298760
G BAG3 BAG cochaperone 3 JBrowse link 14 129,510,240 129,533,998 RGD:9068941
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G BECN2 beclin 2 JBrowse link 10 15,388,712 15,390,250 RGD:14298760
G CTSD cathepsin D JBrowse link 2 1,188,548 1,197,642 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 4 110,881,770 110,954,092 RGD:14298760
G EMC6 ER membrane protein complex subunit 6 JBrowse link 12 49,759,153 49,760,069 RGD:14298760
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 19,806,363 19,893,350 RGD:9068941
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 5 61,758,127 61,767,427 RGD:14298760
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 6 12,122,219 12,132,986 RGD:14298760
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene JBrowse link 1 76,675,741 76,676,338 RGD:14298760
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 17 37,957,830 37,959,505 RGD:14298760
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:14298760
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 10 15,371,182 15,379,067 RGD:14298760
G NSFL1C NSFL1 cofactor JBrowse link 17 33,869,487 33,890,873 RGD:14298760
G PACS2 phosphofurin acidic cluster sorting protein 2 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:14298760
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:14298760
G PSEN1 presenilin 1 JBrowse link 7 96,478,179 96,567,884 RGD:14298760
G RAB19 RAB19, member RAS oncogene family JBrowse link 18 9,367,239 9,391,097 RGD:14298760
G RAB1A RAB1A, member RAS oncogene family JBrowse link 3 76,837,673 76,868,156 RGD:14298760
G RAB23 RAB23, member RAS oncogene family JBrowse link 7 28,632,065 28,658,958 RGD:14298760
G RAB33B RAB33B, member RAS oncogene family JBrowse link 8 87,545,106 87,570,545 RGD:14298760
G RAB43 RAB43, member RAS oncogene family JBrowse link 13 71,564,250 71,596,318 RGD:14298760
G RAB7A RAB7A, member RAS oncogene family JBrowse link 13 71,777,422 71,886,758 RGD:14298760
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:14298760
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 15 120,193,657 120,213,625 RGD:14298760
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 141,359,402 141,367,222 RGD:14298760
G STX12 syntaxin 12 JBrowse link 6 84,918,827 84,960,235 RGD:14298760
G SYNPO2 synaptopodin 2 JBrowse link 8 104,677,580 104,844,169 RGD:9068941
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 2 4,844,627 4,860,562 RGD:14298760
G TMEM41B transmembrane protein 41B JBrowse link 9 223,973 249,813 RGD:14298760
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 4 41,747,654 41,766,688 RGD:14298760
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 17 38,104,189 38,113,167 RGD:14298760
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 6 115,692,509 115,786,668 RGD:14298760
G UBQLN1 ubiquilin 1 JBrowse link 10 31,275,916 31,317,521 RGD:14298760
G UBQLN2 ubiquilin 2 JBrowse link X 48,948,062 48,951,392 RGD:14298760
G UBXN2A UBX domain protein 2A JBrowse link 3 114,667,278 114,714,185 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:9068941
G VMP1 vacuole membrane protein 1 RGD:14298760
G WDR45 WD repeat domain 45 JBrowse link X 43,150,691 43,155,981 RGD:14298760
G WDR45B WD repeat domain 45B JBrowse link 12 522,762 547,333 RGD:14298760
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 12 11,715,332 11,752,009 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 3 6,037,732 6,142,569 RGD:9068941
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G CHMP4A charged multivesicular body protein 4A JBrowse link 7 75,089,092 75,093,796 RGD:14298760
G CHMP4B charged multivesicular body protein 4B JBrowse link 17 37,285,422 37,334,103 RGD:14298760
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 7 23,977,683 23,992,673 RGD:14298760
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 9 52,621,175 52,672,660 RGD:14298760
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 3 103,566,214 103,612,855 RGD:14298760
G LOC100157002 vesicle-trafficking protein SEC22b JBrowse link 4 100,880,843 100,900,942 RGD:14298760
G LRRK2 leucine rich repeat kinase 2 JBrowse link 5 71,800,337 71,945,828 RGD:14298760
G MTM1 myotubularin 1 JBrowse link X 122,286,904 122,379,302 RGD:14298760
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 3 18,402,781 18,404,411 RGD:14298760
G PHF23 PHD finger protein 23 JBrowse link 12 52,590,801 52,595,208 RGD:14298760
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:14298760
G SCFD1 sec1 family domain containing 1 JBrowse link 7 68,694,579 68,851,055 RGD:14298760
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 12 60,435,276 60,443,525 RGD:14298760
G TMEM39A transmembrane protein 39A JBrowse link 13 140,797,098 140,830,732 RGD:9068941
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 4 110,881,770 110,954,092 RGD:14298760
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 1 267,964,875 268,008,833 RGD:14298760
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 52,224,367 52,408,928 RGD:14298760
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 12 23,317,113 23,345,661 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 5 22,854,142 22,867,032 RGD:14298760
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 15 16,756,368 16,893,148 RGD:14298760
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 10 9,734,766 9,828,330 RGD:14298760
G RALB RAS like proto-oncogene B JBrowse link 15 31,064,341 31,118,437 RGD:14298760
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 4 129,361,596 129,395,790 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:14298760
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:14298760
G MFN2 mitofusin 2 JBrowse link 6 72,026,512 72,056,439 RGD:14298760
G PACS2 phosphofurin acidic cluster sorting protein 2 RGD:14298760
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:14298760
G STX17 syntaxin 17 JBrowse link 1 241,657,463 241,785,270 RGD:14298760
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 6 115,692,509 115,786,668 RGD:14298760
G WDR45 WD repeat domain 45 JBrowse link X 43,150,691 43,155,981 RGD:14298760
G WDR45B WD repeat domain 45B JBrowse link 12 522,762 547,333 RGD:14298760
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 12 11,715,332 11,752,009 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADPRHL1 ADP-ribosylhydrolase like 1 JBrowse link 11 78,662,293 78,677,945 RGD:14298760
G C10H9orf72 chromosome 10 C9orf72 homolog JBrowse link 10 38,389,366 38,415,903 RGD:14298760
G IFT20 intraflagellar transport 20 JBrowse link 12 44,609,586 44,616,685 RGD:14298760
G IFT88 intraflagellar transport 88 JBrowse link 11 943,444 1,025,617 RGD:9068941
G MTMR3 myotubularin related protein 3 JBrowse link 14 46,874,977 47,022,581 RGD:14298760
G NPRL3 NPR3 like, GATOR1 complex subunit JBrowse link 3 41,478,465 41,540,719 RGD:14298760
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 15 111,372,148 111,468,720 RGD:14298760
G RAB1B RAB1B, member RAS oncogene family JBrowse link 2 6,110,438 6,116,443 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 7 24,215,493 24,217,983 RGD:14298760
G TBC1D12 TBC1 domain family member 12 JBrowse link 14 105,806,384 105,919,986 RGD:14298760
G TBC1D14 TBC1 domain family member 14 JBrowse link 8 3,833,314 3,918,783 RGD:14298760
G UBQLN2 ubiquilin 2 JBrowse link X 48,948,062 48,951,392 RGD:14298760
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 3 6,037,732 6,142,569 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16408
    cellular process 15621
      cellular component organization or biogenesis 5898
        cellular component biogenesis 2881
          cellular component assembly 2671
            organelle assembly 836
              autophagosome assembly 94
                engulfment of target by autophagosome 1
                negative regulation of autophagosome assembly 15
                positive regulation of autophagosome assembly 11
                protein lipidation involved in autophagosome assembly 3
                protein localization to phagophore assembly site 13
                regulation of autophagosome assembly + 37
                substrate localization to autophagosome 1
Path 2
Term Annotations click to browse term
  biological_process 16408
    cellular process 15621
      cellular component organization or biogenesis 5898
        cellular component organization 5736
          organelle organization 3600
            vacuole organization 171
              autophagosome organization 99
                autophagosome assembly 94
                  engulfment of target by autophagosome 1
                  negative regulation of autophagosome assembly 15
                  positive regulation of autophagosome assembly 11
                  protein lipidation involved in autophagosome assembly 3
                  protein localization to phagophore assembly site 13
                  regulation of autophagosome assembly + 37
                  substrate localization to autophagosome 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.