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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome assembly
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Accession:GO:0000045 term browser browse the term
Definition:The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms:exact_synonym: autophagic vacuole assembly;   autophagosome biosynthesis;   autophagosome formation
 narrow_synonym: PAS formation
 related_synonym: autophagic vacuole formation


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autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07001519.1 RGD:13792537
G AABR07048308.1 RGD:13792537
G AABR07072668.1 RGD:13792537
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link 3 80,634,470 80,830,068 RGD:1624291
G Atg101 autophagy related 101 JBrowse link 7 142,929,381 142,938,559 RGD:1624291
RGD:13792537
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:1624291
RGD:13792537
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:1624291
RGD:13792537
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:1624291
RGD:13792537
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:13792537
G Atg16l2 autophagy related 16-like 2 JBrowse link 1 166,401,271 166,415,078 RGD:13792537
RGD:1624291
G Atg2a autophagy related 2A JBrowse link 1 221,612,584 221,632,291 RGD:1624291
RGD:13792537
G Atg2b autophagy related 2B JBrowse link 6 129,449,451 129,519,599 RGD:13792537
G Atg3 autophagy related 3 JBrowse link 11 60,585,192 60,613,706 RGD:1600115
RGD:13792537
RGD:1624291
G Atg4b autophagy related 4B, cysteine peptidase JBrowse link 9 100,888,457 100,920,123 RGD:1624291
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1643189
RGD:13792537
RGD:1624291
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
RGD:13792537
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:1624291
RGD:13792537
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:1624291
RGD:13792537
G Bag3 BAG cochaperone 3 JBrowse link 1 199,941,258 199,965,191 RGD:12793031
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1643189
RGD:13792537
RGD:1600115
RGD:1624291
G Becn2 beclin 2 JBrowse link 13 93,971,720 93,974,467 RGD:13792537
G Ctsd cathepsin D JBrowse link 1 215,541,570 215,553,446 RGD:1624291
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 2 211,243,398 211,323,283 RGD:1624291
RGD:1600115
G Emc6 ER membrane protein complex subunit 6 JBrowse link 10 59,741,772 59,743,338 RGD:1624291
RGD:13792537
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link 1 5,448,958 5,571,512 RGD:1624291
G Gabarap GABA type A receptor-associated protein JBrowse link 10 56,601,288 56,604,223 RGD:13792537
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:13792537
G Gabarapl2 GABA type A receptor associated protein like 2 JBrowse link 19 44,164,935 44,175,771 RGD:13792537
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G LOC100359937 GABA(A) receptor-associated protein-like 2-like JBrowse link 8 95,943,674 95,944,604 RGD:13792537
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:8554284
RGD:13792537
RGD:1624291
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 19 53,635,449 53,643,970 RGD:13792537
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 JBrowse link 16 75,864,144 75,874,567 RGD:13792537
G Nsfl1c NSFL1 cofactor JBrowse link 3 146,980,923 147,005,478 RGD:13792537
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link 6 137,824,136 137,889,144 RGD:1624291
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:2303129
RGD:13792537
RGD:1624291
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:1624291
G Rab19 RAB19, member RAS oncogene family JBrowse link 4 67,166,412 67,176,141 RGD:13792537
G Rab1a RAB1A, member RAS oncogene family JBrowse link 14 104,475,082 104,500,176 RGD:1624291
RGD:13792537
RGD:1600115
G Rab1b RAB1B, member RAS oncogene family JBrowse link 1 220,483,529 220,491,469 RGD:13792537
G Rab23 RAB23, member RAS oncogene family JBrowse link 9 38,469,784 38,496,185 RGD:1624291
RGD:13792537
G Rab33b RAB33B, member RAS oncogene family JBrowse link 2 140,541,619 140,552,220 RGD:1624291
G Rab43 RAB43, member RAS oncogene family JBrowse link 4 119,695,012 119,714,490 RGD:13792537
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:1624291
RGD:13792537
G Rufy4 RUN and FYVE domain containing 4 JBrowse link 9 81,401,080 81,422,016 RGD:1624291
RGD:13792537
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 28,529,537 28,535,828 RGD:1600115
RGD:13792537
RGD:1624291
G Stx12 syntaxin 12 JBrowse link 5 151,044,050 151,072,893 RGD:1624291
RGD:1600115
G Synpo2 synaptopodin 2 JBrowse link 2 227,255,243 227,411,924 RGD:12793031
G Tmem41b transmembrane protein 41B JBrowse link 1 174,605,833 174,620,192 RGD:1624291
RGD:1600115
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 JBrowse link 5 24,402,895 24,419,651 RGD:13792537
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link 3 150,910,398 150,918,525 RGD:1624291
RGD:13792537
RGD:1600115
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 15,298,673 15,375,034 RGD:13792537
G Ubqln1 ubiquilin 1 JBrowse link 17 6,840,441 6,878,842 RGD:1624291
RGD:13792537
RGD:1600115
G Ubqln2 ubiquilin 2 JBrowse link X 18,723,313 18,726,732 RGD:13792537
G Ubxn2a UBX domain protein 2A JBrowse link 6 28,969,471 28,997,987 RGD:13792537
G Ubxn2b UBX domain protein 2B JBrowse link 5 19,285,368 19,314,199 RGD:13792537
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
G Vmp1 vacuole membrane protein 1 JBrowse link 10 73,901,988 74,001,900 RGD:1600115
RGD:1624291
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:1600115
RGD:13792537
RGD:1624291
G Wdr45b WD repeat domain 45B JBrowse link 10 110,523,843 110,555,769 RGD:1624291
RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:1624291
RGD:13792537
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1600115
RGD:13792537
RGD:1624291
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 12 11,433,815 11,526,465 RGD:1624291
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1624291
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:1624291
G Fez1 fasciculation and elongation protein zeta 1 JBrowse link 8 39,305,128 39,350,270 RGD:1624291
RGD:1600115
G Fez2 fasciculation and elongation protein zeta 2 JBrowse link 6 963,903 1,003,955 RGD:1624291
RGD:1600115
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:13792537
G Mtm1 myotubularin 1 JBrowse link 6 18,821,821 18,840,449 RGD:1624291
RGD:13792537
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link 1 194,767,484 194,769,519 RGD:1600115
RGD:1624291
G Phf23 PHD finger protein 23 JBrowse link 10 56,605,078 56,609,236 RGD:1624291
RGD:13792537
RGD:1600115
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Scfd1 sec1 family domain containing 1 JBrowse link 6 72,124,408 72,202,703 RGD:1624291
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:1624291
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link 10 47,019,326 47,026,465 RGD:1624291
G Tmem39a transmembrane protein 39a JBrowse link 11 64,723,181 64,752,514 RGD:1624291
RGD:1600115
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:11561937
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 2 211,243,398 211,323,283 RGD:1624291
RGD:1600115
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 3 11,970,401 12,009,463 RGD:1624291
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 17 85,533,056 85,748,843 RGD:1624291
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 10 85,655,223 85,684,138 RGD:1624291
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 7 70,483,948 70,498,995 RGD:1624291
RGD:1600115
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 13 44,578,208 44,649,876 RGD:1624291
RGD:1600115
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 13 103,157,806 103,229,010 RGD:1624291
RGD:1600115
G Ralb RAS like proto-oncogene B JBrowse link 13 35,494,716 35,531,503 RGD:1600115
RGD:1624291
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 JBrowse link 2 250,709,812 250,744,216 RGD:1600115
RGD:1624291
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:13208863
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:1600115
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1624291
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:13792537
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:13792537
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:13792537
G Mfn2 mitofusin 2 JBrowse link 5 164,684,244 164,715,414 RGD:1624291
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link 6 137,824,136 137,889,144 RGD:1624291
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:1624291
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1624291
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 15,298,673 15,375,034 RGD:13792537
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:13792537
G Wdr45b WD repeat domain 45B JBrowse link 10 110,523,843 110,555,769 RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:13792537
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1624291
RGD:1600115
RGD:13792537
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07006774.1 RGD:13792537
G AABR07006775.1 RGD:13792537
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G LOC100363782 RAB1B, member RAS oncogene family-like RGD:1600115
G LOC102555167 ras-related protein Rab-1B-like JBrowse link 1 220,480,828 220,491,456 RGD:1600115
G LOC685933 hypothetical protein LOC685933 JBrowse link 1 257,828,474 257,885,689 RGD:13792537
G Mtmr3 myotubularin related protein 3 JBrowse link 14 84,701,559 84,820,487 RGD:1624291
RGD:1600115
G Nprl2 NPR2-like, GATOR1 complex subunit JBrowse link 8 116,297,950 116,301,123 RGD:13792537
G Nprl3 NPR3-like, GATOR1 complex subunit JBrowse link 10 15,620,824 15,661,332 RGD:13792537
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 9 71,911,744 72,005,816 RGD:1624291
G Rab1b RAB1B, member RAS oncogene family JBrowse link 1 220,483,529 220,491,469 RGD:1600115
RGD:1624291
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1600115
RGD:1624291
G Rnf5 ring finger protein 5 JBrowse link 20 4,366,244 4,368,690 RGD:1624291
G Tbc1d12 TBC1 domain family, member 12 JBrowse link 1 257,517,128 257,599,659 RGD:13792537
G Tbc1d14 TBC1 domain family, member 14 JBrowse link 14 79,172,272 79,438,765 RGD:1624291
RGD:13792537
RGD:1600115
G Ubqln2 ubiquilin 2 JBrowse link X 18,723,313 18,726,732 RGD:1624291
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 12 11,433,815 11,526,465 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19676
    cellular process 18449
      cellular component organization or biogenesis 6664
        cellular component biogenesis 3234
          cellular component assembly 2941
            organelle assembly 935
              autophagosome assembly 102
                engulfment of target by autophagosome 1
                negative regulation of autophagosome assembly 14
                positive regulation of autophagosome assembly 11
                protein lipidation involved in autophagosome assembly 4
                protein localization to phagophore assembly site 13
                regulation of autophagosome assembly + 41
                substrate localization to autophagosome 1
Path 2
Term Annotations click to browse term
  biological_process 19676
    cellular process 18449
      cellular component organization or biogenesis 6664
        cellular component organization 6424
          organelle organization 4011
            vacuole organization 194
              autophagosome organization 107
                autophagosome assembly 102
                  engulfment of target by autophagosome 1
                  negative regulation of autophagosome assembly 14
                  positive regulation of autophagosome assembly 11
                  protein lipidation involved in autophagosome assembly 4
                  protein localization to phagophore assembly site 13
                  regulation of autophagosome assembly + 41
                  substrate localization to autophagosome 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.