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ONTOLOGY REPORT - ANNOTATIONS


Term:deadenylation-dependent decapping of nuclear-transcribed mRNA
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Accession:GO:0000290 term browser browse the term
Definition:Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length.
Synonyms:exact_synonym: deadenylation-dependent decapping of nuclear mRNA;   deadenylylation-dependent decapping


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deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07066144.1 RGD:13792537
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:13792537
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:13792537
G Dcps decapping enzyme, scavenger JBrowse link 8 36,321,992 36,374,665 RGD:13792537
RGD:1600115
G LOC100909830 mRNA-decapping enzyme 2-like JBrowse link 18 78,577,303 78,610,463 RGD:13792537
G LOC100912393 mRNA-decapping enzyme 2-like JBrowse link 9 3,940,948 3,965,964 RGD:13792537
G LOC103690064 m7GpppN-mRNA hydrolase-like JBrowse link 18 35,849,655 35,883,568 RGD:13792537
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:13792537
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:1624291
RGD:13792537
G Patl1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 1 228,337,756 228,369,719 RGD:1600115
RGD:13792537
RGD:1624291
G Patl2 PAT1 homolog 2 JBrowse link 3 114,065,814 114,075,404 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      negative regulation of metabolic process 3227
        negative regulation of macromolecule metabolic process 2957
          negative regulation of gene expression 2076
            mRNA catabolic process 225
              nuclear-transcribed mRNA catabolic process 112
                deadenylation-dependent decapping of nuclear-transcribed mRNA 14
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      cellular metabolic process 10918
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              RNA metabolic process 4347
                RNA catabolic process 261
                  mRNA catabolic process 225
                    nuclear-transcribed mRNA catabolic process 112
                      nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 53
                        deadenylation-dependent decapping of nuclear-transcribed mRNA 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.