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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome membrane
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Accession:GO:0000421 term browser browse the term
Definition:The lipid bilayer surrounding an autophagosome, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered.
Synonyms:exact_synonym: autophagic vacuole membrane


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autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Atg16l1 autophagy related 16-like 1 ISO
IBA
(MGI:MGI:4880808|PMID:21220506)
PMID:21873635
RGD PMID:21220506, PMID:21873635 MGI:MGI:4880808, RGD:13792537 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228
JBrowse link
G Atg16l2 autophagy related 16-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:166,401,271...166,415,078
Ensembl chr 1:166,401,271...166,413,564
JBrowse link
G Atg9a autophagy related 9A NOT ISO (PMID:22456507) RGD PMID:22456507 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382
JBrowse link
G Atg9b autophagy related 9B IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029
JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:11,137,889...11,164,854
Ensembl chr  X:11,136,939...11,164,915
JBrowse link
G Gabarap GABA type A receptor-associated protein ISO
IBA
(PMID:15169837)
PMID:21873635
RGD PMID:15169837, PMID:21873635 RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 ISO
IBA
(PMID:15169837)
PMID:21873635
RGD PMID:15169837, PMID:21873635 RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770
JBrowse link
G Irgm immunity-related GTPase M IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 ISO (MGI:MGI:6323456|PMID:31006538) RGD PMID:31006538 MGI:MGI:6323456 NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA
IBA
ISO
PMID:21873635
(MGI:MGI:4880808|PMID:21220506)
RGD PMID:21220506, PMID:16420522, PMID:21873635, PMID:16300744, PMID:19337031 MGI:MGI:4880808, RGD:1643189, RGD:13792537, RGD:1643207, RGD:4892338 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta IDA
IBA
PMID:21873635
PMID:15169837
RGD
GO_Central
UniProt
PMID:16300744, PMID:21873635, PMID:15169837 RGD:1643207, RGD:13792537, RGD:8553983 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519
JBrowse link
G Prkd1 protein kinase D1 ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:71,035,017...71,349,531
Ensembl chr 6:71,035,332...71,349,249
JBrowse link
G Rab7a RAB7A, member RAS oncogene family IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO (MGI:MGI:6323456|PMID:31006538) RGD PMID:31006538 MGI:MGI:6323456 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341
JBrowse link
G Rpn2 ribophorin II IDA RGD PMID:2351689 RGD:2325969 NCBI chr 3:153,398,373...153,445,633
Ensembl chr 3:153,398,130...153,445,632
JBrowse link
G Rubcnl rubicon like autophagy enhancer ISO
IBA
(PMID:28306502)
PMID:21873635
RGD PMID:28306502, PMID:21873635 RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 ISO
IEA
(PMID:17891140)
GO_REF:0000044
RGD
UniProt
PMID:17891140 GO_REF:0000044 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196
JBrowse link
G Snap29 synaptosome associated protein 29 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828
JBrowse link
G Stx17 syntaxin 17 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23217709), (PMID:26416964), (PMID:28306502)
UniProt
RGD
PMID:23217709, PMID:26416964, PMID:28306502, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:21575909), (PMID:22342342)
UniProt
RGD
PMID:21575909, PMID:22342342, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:12,374,132...12,403,382
Ensembl chr12:12,374,790...12,402,552
JBrowse link
G Tex264 testis expressed 264 ISO (PMID:31006537), (PMID:31006538)
(MGI:MGI:6323456|PMID:31006538)
RGD PMID:31006537, PMID:31006538 MGI:MGI:6323456 NCBI chr 8:115,360,706...115,388,299
Ensembl chr 8:115,360,713...115,388,266
JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:34,314,645...34,322,172
Ensembl chr15:34,314,656...34,322,115
JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578
JBrowse link
G Vmp1 vacuole membrane protein 1 IDA PMID:17940279 UniProt PMID:17940279 RGD:8554414 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895
JBrowse link
G Wdr81 WD repeat domain 81 ISO
ISS
(PMID:28404643)
GO_REF:0000024
RGD
UniProt
PMID:28404643 GO_REF:0000024 NCBI chr10:62,273,817...62,287,213
Ensembl chr10:62,273,800...62,287,189
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 ISO (PMID:17618624) RGD PMID:17618624 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525
JBrowse link
extrinsic component of autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 ISO (MGI:MGI:3051925|PMID:15292400) RGD PMID:15292400 MGI:MGI:3051925 NCBI chr14:9,169,409...9,384,835
Ensembl chr14:9,141,512...9,381,870
JBrowse link
integral component of autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:10393803) RGD PMID:10393803 NCBI chr15:51,222,954...51,250,787
Ensembl chr15:51,222,954...51,250,787
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO
IBA
(MGI:MGI:3038873|PMID:12221139)
PMID:21873635
RGD PMID:12221139, PMID:21873635 MGI:MGI:3038873, RGD:13792537 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      cytoplasm 11457
        vacuole 585
          autophagosome 98
            autophagosome membrane 36
              amphisome membrane 0
              extrinsic component of autophagosome membrane 2
              intrinsic component of autophagosome membrane + 2
Path 2
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      organelle 13258
        membrane-bounded organelle 11449
          organelle membrane 2878
            bounding membrane of organelle 1532
              vacuolar membrane 267
                autophagosome membrane 36
                  amphisome membrane 0
                  extrinsic component of autophagosome membrane 2
                  intrinsic component of autophagosome membrane + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.