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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA double-strand break processing
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Accession:GO:0000729 term browser browse the term
Definition:The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang.


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DNA double-strand break processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:1624291
G Dna2 DNA replication helicase/nuclease 2 RGD:1600115
G Exd2 exonuclease 3'-5' domain containing 2 JBrowse link 6 104,017,620 104,051,442 RGD:1624291
G Setmar SET domain and mariner transposase fusion gene JBrowse link 4 140,092,346 140,104,495 RGD:1624291
G Slc25a16 solute carrier family 25 member 16 JBrowse link 20 27,283,383 27,308,069 RGD:1600115
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` JBrowse link 4 95,884,020 95,945,248 RGD:1624291
RGD:1600115
G Ube2n ubiquitin-conjugating enzyme E2N JBrowse link 7 36,610,147 36,640,190 RGD:1624291
G Ube2v2 ubiquitin conjugating enzyme E2 V2 JBrowse link 11 89,557,273 89,591,175 RGD:1624291
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07031480.1 RGD:13792537
G Rad52 RAD52 homolog, DNA repair protein JBrowse link 4 152,429,826 152,451,875 RGD:1624291
G Rbbp8 RB binding protein 8, endonuclease JBrowse link 18 3,134,630 3,227,702 RGD:1600115
RGD:13792537
RGD:1624291
G RGD1565844 similar to RIKEN cDNA 1700045I19 JBrowse link X 32,495,573 32,496,646 RGD:13792537
G Rnf138 ring finger protein 138 JBrowse link 18 15,146,925 15,167,361 RGD:1624291
RGD:13792537
RGD:1600115
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit JBrowse link 1 198,114,514 198,120,061 RGD:1624291
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link 10 11,787,756 11,808,326 RGD:1624291
meiotic DNA double-strand break processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link 10 11,787,756 11,808,326 RGD:13792537
G Spo11 SPO11, initiator of meiotic double stranded breaks JBrowse link 3 170,991,573 171,008,226 RGD:13792537
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brip1 BRCA1 interacting protein C-terminal helicase 1 JBrowse link 10 73,507,009 73,632,742 RGD:1624291
G Six6os1 Six6 opposite strand transcript 1 JBrowse link 6 95,761,718 95,797,314 RGD:1624291
RGD:13792537
regulation of DNA double-strand break processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Helb DNA helicase B JBrowse link 7 64,860,641 64,888,146 RGD:1624291
G Wdr70 WD repeat domain 70 JBrowse link 2 56,944,462 57,196,522 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12096
      cellular metabolic process 10917
        cellular macromolecule metabolic process 8392
          DNA metabolic process 911
            DNA double-strand break processing 20
              DNA double-strand break processing involved in repair via single-strand annealing 7
              DNA double-strand break processing involved in repair via synthesis-dependent strand annealing 0
              gene conversion at mating-type locus, DNA double-strand break processing 0
              meiotic DNA double-strand break processing + 4
              regulation of DNA double-strand break processing 2
Path 2
Term Annotations click to browse term
  biological_process 19858
    cellular process 18617
      cellular metabolic process 10917
        cellular nitrogen compound metabolic process 6542
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              DNA metabolic process 911
                DNA repair 477
                  double-strand break repair 245
                    DNA double-strand break processing 20
                      DNA double-strand break processing involved in repair via single-strand annealing 7
                      DNA double-strand break processing involved in repair via synthesis-dependent strand annealing 0
                      gene conversion at mating-type locus, DNA double-strand break processing 0
                      meiotic DNA double-strand break processing + 4
                      regulation of DNA double-strand break processing 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.