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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA synthesis involved in DNA repair
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Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


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DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2D cyclin dependent kinase inhibitor 2D ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chr19:10,118,302...10,120,957 JBrowse link
G HROB homologous recombination factor with OB-fold ISO (PMID:31467087) UniProt PMID:31467087 NCBI chr17:13,233,464...13,254,726
Ensembl chr17:13,395,473...13,409,505
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chr  X:17,290,805...17,592,163
Ensembl chr  X:24,657,878...24,960,231
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:1730053)
(PMID:24191025), (PMID:3335506)
UniProtKB
UniProt
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chr19:47,347,919...47,381,772
Ensembl chr19:56,251,356...56,297,611
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chr12:129,975,750...130,038,402
Ensembl chr12:134,695,976...134,758,650
JBrowse link
G POLH DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chr 6:43,168,195...43,205,811
Ensembl chr 6:44,462,225...44,495,704
JBrowse link
G SIRT1 sirtuin 1 ISO (MGI:MGI:5297784|PMID:17612497) UniProtKB PMID:17612497 MGI:MGI:5297784 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G WRN WRN RecQ like helicase ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chr 8:30,353,643...30,492,978
Ensembl chr 8:27,541,145...27,679,855
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 ISO (PMID:15670210) UniProtKB PMID:15670210 NCBI chr 6:2,587,170...2,608,179
Ensembl chr 6:2,691,235...2,711,062
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chr  X:17,290,805...17,592,163
Ensembl chr  X:24,657,878...24,960,231
JBrowse link
G TREX1 three prime repair exonuclease 1 ISO (MGI:MGI:5562498|PMID:23993650) MGI PMID:23993650 MGI:MGI:5562498 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chr19:47,347,919...47,381,772
Ensembl chr19:56,251,356...56,297,611
JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 ISO (PMID:24191025) UniProt PMID:24191025 NCBI chr17:28,416,912...28,427,280
Ensembl chr17:28,919,371...28,928,682
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLK DNA polymerase kappa ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chr 5:39,700,659...39,788,727
Ensembl chr 5:40,311,526...40,401,003
JBrowse link
G PRIMPOL primase and DNA directed polymerase ISO (PMID:24682820), (PMID:25746449), (PMID:28534480) UniProt PMID:24682820, PMID:25746449, PMID:28534480 NCBI chr 4:176,815,122...176,860,682 JBrowse link
G REV1 REV1 DNA directed polymerase ISO (MGI:MGI:2157239|PMID:11711549) MGI PMID:11711549 MGI:MGI:2157239 NCBI chr2A:99,808,519...99,897,989
Ensembl chr2A:100,329,475...100,418,678
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPATA22 spermatogenesis associated 22 ISO (MGI:MGI:5314623|PMID:22011390) MGI PMID:22011390 MGI:MGI:5314623 NCBI chr17:3,120,296...3,532,343
Ensembl chr17:3,489,143...3,560,654
JBrowse link
G SYCP1 synaptonemal complex protein 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728
JBrowse link
G TEX12 testis expressed 12 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr11:107,048,417...107,053,655
Ensembl chr11:110,817,016...110,896,829
JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTL denticleless E3 ubiquitin protein ligase homolog ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chr 1:187,603,600...187,672,006
Ensembl chr 1:192,466,408...192,535,071
JBrowse link
G FAAP20 FA core complex associated protein 20 ISO (PMID:22266823) UniProtKB PMID:22266823 NCBI chr 1:900,616...922,845 JBrowse link
G PARP10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:24695737) UniProt PMID:24695737 NCBI chr 8:140,743,061...140,744,014
Ensembl chr 8:143,735,819...143,744,138
JBrowse link
G PCLAF PCNA clamp associated factor ISO (PMID:23000965) UniProtKB PMID:23000965 NCBI chr15:43,311,115...43,331,979 JBrowse link
G PCNA proliferating cell nuclear antigen ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440
JBrowse link
G POLI DNA polymerase iota ISO (MGI:MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:MGI:3695544 NCBI chr18:47,653,545...47,706,614
Ensembl chr18:50,990,959...51,019,666
JBrowse link
G POLN DNA polymerase nu ISO (PMID:19908865)
(PMID:20102227)
UniProtKB PMID:19908865, PMID:20102227 NCBI chr 4:2,214,154...2,385,094
Ensembl chr 4:2,122,309...2,292,431
JBrowse link
G PRIMPOL primase and DNA directed polymerase ISO (PMID:24240614), (PMID:24267451) UniProtKB PMID:24240614, PMID:24267451 NCBI chr 4:176,815,122...176,860,682 JBrowse link
G SPRTN SprT-like N-terminal domain ISO (PMID:22681887), (PMID:22902628)
(PMID:23042605), (PMID:23042607)
UniProtKB PMID:22681887, PMID:22902628, PMID:23042605, PMID:23042607 NCBI chr 1:206,889,897...206,906,047
Ensembl chr 1:211,914,082...211,931,093
JBrowse link
G VCP valosin containing protein ISO (PMID:23042605) UniProtKB PMID:23042605 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588
JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chr14:45,085,146...45,114,965
Ensembl chr14:63,354,458...63,359,403
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12561
    metabolic process 7977
      cellular metabolic process 7333
        cellular macromolecule metabolic process 5699
          DNA metabolic process 677
            DNA repair 342
              DNA synthesis involved in DNA repair 28
                DNA synthesis involved in UV-damage excision repair 2
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 15
Path 2
Term Annotations click to browse term
  biological_process 12561
    metabolic process 7977
      cellular metabolic process 7333
        cellular aromatic compound metabolic process 3878
          nucleobase-containing compound metabolic process 3701
            nucleic acid metabolic process 3398
              DNA metabolic process 677
                DNA repair 342
                  DNA synthesis involved in DNA repair 28
                    DNA synthesis involved in UV-damage excision repair 2
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.