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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA synthesis involved in DNA repair
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Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


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DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chrNW_004955495:1,755,280...1,759,125
Ensembl chrNW_004955495:1,755,878...1,757,037
JBrowse link
G Hrob homologous recombination factor with OB-fold ISO (PMID:31467087) UniProt PMID:31467087 NCBI chrNW_004955451:17,256,593...17,264,872 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chrNW_004955509:5,007,385...5,319,683
Ensembl chrNW_004955509:5,007,182...5,319,894
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:1730053)
(PMID:24191025), (PMID:3335506)
UniProtKB
UniProt
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Polh DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004955437:9,392,484...9,409,186
Ensembl chrNW_004955437:9,397,141...9,414,042
JBrowse link
G Sirt1 sirtuin 1 ISO (MGI:MGI:5297784|PMID:17612497) UniProtKB PMID:17612497 MGI:MGI:5297784 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Wrn WRN RecQ like helicase ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chrNW_004955463:7,495,243...7,633,532
Ensembl chrNW_004955463:7,525,100...7,633,596
JBrowse link
G Wrnip1 WRN helicase interacting protein 1 ISO (PMID:15670210) UniProtKB PMID:15670210 NCBI chrNW_004955465:10,574,601...10,594,570
Ensembl chrNW_004955465:10,574,551...10,593,780
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chrNW_004955509:5,007,385...5,319,683
Ensembl chrNW_004955509:5,007,182...5,319,894
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5562498|PMID:23993650) MGI PMID:23993650 MGI:MGI:5562498 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 ISO (PMID:24191025) UniProt PMID:24191025 NCBI chrNW_004955481:4,776,721...4,785,817
Ensembl chrNW_004955481:4,776,721...4,785,817
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polk DNA polymerase kappa ISO (PMID:28297716) UniProtKB PMID:28297716 NCBI chrNW_004955425:25,164,749...25,228,064
Ensembl chrNW_004955425:25,161,222...25,228,524
JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24682820), (PMID:25746449), (PMID:28534480) UniProt PMID:24682820, PMID:25746449, PMID:28534480 NCBI chrNW_004955403:24,278,727...24,307,312
Ensembl chrNW_004955403:24,279,122...24,303,682
JBrowse link
G Rev1 REV1 DNA directed polymerase ISO (MGI:MGI:2157239|PMID:11711549) MGI PMID:11711549 MGI:MGI:2157239 NCBI chrNW_004955470:5,677,222...5,738,362
Ensembl chrNW_004955470:5,677,222...5,738,362
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 ISO (MGI:MGI:5314623|PMID:22011390) MGI PMID:22011390 MGI:MGI:5314623 NCBI chrNW_004955467:13,304,314...13,325,228
Ensembl chrNW_004955467:13,306,496...13,325,300
JBrowse link
G Sycp1 synaptonemal complex protein 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856
JBrowse link
G Tex12 testis expressed 12 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955412:13,829,637...13,834,481
Ensembl chrNW_004955412:13,831,353...13,834,481
JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase homolog ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chrNW_004955406:5,256,057...5,299,573
Ensembl chrNW_004955406:5,254,558...5,299,573
JBrowse link
G Faap20 FA core complex associated protein 20 ISO (PMID:22266823) UniProtKB PMID:22266823 NCBI chrNW_004955486:8,938,352...8,944,631 JBrowse link
G Parp10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:24695737) UniProt PMID:24695737 NCBI chrNW_004955454:2,644,718...2,651,962
Ensembl chrNW_004955454:2,645,003...2,651,604
JBrowse link
G Pclaf PCNA clamp associated factor ISO (PMID:23000965) UniProtKB PMID:23000965 NCBI chrNW_004955450:11,072,778...11,082,687 JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:20129063) UniProtKB PMID:20129063 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Poli DNA polymerase iota ISO (MGI:MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:MGI:3695544 NCBI chrNW_004955402:38,866,528...38,891,235
Ensembl chrNW_004955402:38,866,744...38,891,011
JBrowse link
G Poln DNA polymerase nu ISO (PMID:20102227)
(PMID:19908865)
UniProtKB PMID:19908865, PMID:20102227 NCBI chrNW_004955514:1,214,867...1,342,172
Ensembl chrNW_004955514:1,215,131...1,329,024
JBrowse link
G Primpol primase and DNA directed polymerase ISO (PMID:24240614), (PMID:24267451) UniProtKB PMID:24240614, PMID:24267451 NCBI chrNW_004955403:24,278,727...24,307,312
Ensembl chrNW_004955403:24,279,122...24,303,682
JBrowse link
G Sprtn SprT-like N-terminal domain ISO (PMID:22681887), (PMID:22902628)
(PMID:23042605), (PMID:23042607)
UniProtKB PMID:22681887, PMID:22902628, PMID:23042605, PMID:23042607 NCBI chrNW_004955492:7,463,228...7,476,683
Ensembl chrNW_004955492:7,464,959...7,476,458
JBrowse link
G Vcp valosin containing protein ISO (PMID:23042605) UniProtKB PMID:23042605 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chrNW_004955466:5,353,355...5,376,240
Ensembl chrNW_004955466:5,355,344...5,376,240
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11889
    metabolic process 7609
      cellular metabolic process 7027
        cellular macromolecule metabolic process 5490
          DNA metabolic process 657
            DNA repair 335
              DNA synthesis involved in DNA repair 28
                DNA synthesis involved in UV-damage excision repair 2
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 15
Path 2
Term Annotations click to browse term
  biological_process 11889
    metabolic process 7609
      cellular metabolic process 7027
        cellular aromatic compound metabolic process 3735
          nucleobase-containing compound metabolic process 3563
            nucleic acid metabolic process 3276
              DNA metabolic process 657
                DNA repair 335
                  DNA synthesis involved in DNA repair 28
                    DNA synthesis involved in UV-damage excision repair 2
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.